Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

34079760 .. 34089052

Gene Structure 9293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCGCGAGCTACGGGAGTCCTCGCGAAGATATATATGCAATTAAGACGAGCATATCCTACCAAAAACCGTACACCTAAACTTATAATCCTAACTTACACCAGAGGCGATGACAAGCTTTGTACCGAAAAAGAGAGAGAAAAGAATTTTGAATTTTGGGGTGCTATATTGATTTTGGTTGCAGGATCATATGGAGGAAGCTGGGGTATCATATTTATTTATGACTATGATTATGTATTTTCTAAGAATGGTCTTGTGGCTCACAAAGATGGGAAGCTCATTGGCACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGCTCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCAATTGGGCGAAACTGGAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGAGAAGGTTAGATACTTATTTCACAACGTATGCCCGAAAATGGTTTCTATCCTTCGTGAGAAGTTTGCTCACTTTAACCTGACATTTTCCATGGGAGGACAGATAAGCTTTGATTACTTTCACTTCCTGAGCGATCGAACTGTAGCAAACGACCATTTATTAATCGAAAATCCATTAATTAATACATGTAGGCATTCCAGCAAGATATGTGCACGAACTTTCATTCGATTTGAAGCATCCAAGATTTACAATTTGCAAAAACAGCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

249

Amino Acids

29.18

Weight (kDa)

9.38

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	73 - 212	2e-54	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	2 cut(s)	7, 26
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	4 cut(s)	145, 152, 329, 464
AfaI	GTAC	3 cut(s)	73, 124, 388
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	4 cut(s)	152, 298, 470, 710
AluBI	AGCT	7 cut(s)	11, 118, 201, 277, 294, 322, 585
AluI	AGCT	7 cut(s)	11, 118, 201, 277, 294, 322, 585
Alw21I	GWGCWC	1 cut(s)	691
Alw44I	GTGCAC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	193
ApaLI	GTGCAC	1 cut(s)	687
ApoI	RAATTY	4 cut(s)	145, 152, 329, 464
AseI	ATTAAT	4 cut(s)	417, 638, 653, 657
AsuHPI	GGTGA	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
Bbv12I	GWGCWC	1 cut(s)	691
BccI	CCATC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	618
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	286, 446
BmsI	GCATC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	417, 713
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	201
Bsh1236I	CGCG	2 cut(s)	7, 26
Bsh1285I	CGRYCG	1 cut(s)	613
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	2 cut(s)	185, 610
Bsp19I	CCATGG	1 cut(s)	567
Bsp68I	TCGCGA	1 cut(s)	26
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	7, 26
BspLI	GGNNCC	2 cut(s)	286, 446
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	185, 610
BssT1I	CCWWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	71, 619
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	243, 605
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	417, 713
BstFNI	CGCG	2 cut(s)	7, 26
BstKTI	GATC	2 cut(s)	188, 613
BstMBI	GATC	2 cut(s)	185, 610
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 739
BstNSI	RCATGY	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	691
BstUI	CGCG	2 cut(s)	7, 26
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	417, 713
BtuMI	TCGCGA	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	72, 123, 387
CviAII	CATG	2 cut(s)	568, 663
CviJI	RGCY	9 cut(s)	11, 118, 201, 260, 277, 294, 322, 447, 585
CviKI_1	RGCY	9 cut(s)	11, 118, 201, 260, 277, 294, 322, 447, 585
CviQI	GTAC	3 cut(s)	72, 123, 387
DdeI	CTNAG	2 cut(s)	243, 605
DpnI	GATC	2 cut(s)	187, 612
DpnII	GATC	2 cut(s)	185, 610
Eco130I	CCWWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	571, 666
FatI	CATG	2 cut(s)	567, 662
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	424, 700
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	463
Hin1II	CATG	2 cut(s)	571, 666
HindIII	AAGCTT	2 cut(s)	116, 583
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	74, 689
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	25, 533, 604
Hpy8I	GTNNAC	2 cut(s)	74, 689
HpyAV	CCTTC	2 cut(s)	475, 539
HpyCH4III	ACNGT	2 cut(s)	71, 619
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	40, 182, 689, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 739
HpyF3I	CTNAG	2 cut(s)	243, 605
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	571, 666
Kzo9I	GATC	2 cut(s)	185, 610
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	8 cut(s)	115, 168, 187, 302, 427, 569, 617, 688
LweI	GCATC	1 cut(s)	722
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	300, 743
MalI	GATC	2 cut(s)	187, 612
MboI	GATC	2 cut(s)	185, 610
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	9 cut(s)	41, 145, 152, 329, 337, 429, 464, 654, 727
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	32, 98, 188, 375, 445, 566
MseI	TTAA	6 cut(s)	44, 417, 552, 638, 653, 657
MslI	CAYNNNNRTG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	670
MvnI	CGCG	2 cut(s)	7, 26
MwoI	GCNNNNNNNGC	2 cut(s)	291, 739
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	185, 610
NlaIII	CATG	2 cut(s)	571, 666
NlaIV	GGNNCC	2 cut(s)	286, 446
NmuCI	GTSAC	1 cut(s)	300
NruI	TCGCGA	1 cut(s)	26
NspI	RCATGY	1 cut(s)	666
PacI	TTAATTAA	1 cut(s)	657
PciI	ACATGT	1 cut(s)	662
PctI	GAATGC	1 cut(s)	670
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	613
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PscI	ACATGT	1 cut(s)	662
PshBI	ATTAAT	4 cut(s)	417, 638, 653, 657
PsiI	TTATAA	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	286, 446
PvuI	CGATCG	1 cut(s)	613
RruI	TCGCGA	1 cut(s)	26
RsaI	GTAC	3 cut(s)	73, 124, 388
RsaNI	GTAC	3 cut(s)	72, 123, 387
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	44, 417, 552, 638, 653, 657
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	185, 610
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	691
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	9 cut(s)	41, 145, 152, 329, 337, 429, 464, 654, 727
SsiI	CCGC	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	71, 619
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	613, 642, 703
TasI	AATT	9 cut(s)	41, 145, 152, 329, 337, 429, 464, 654, 727
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	6 cut(s)	44, 417, 552, 638, 653, 657
Tru9I	TTAA	6 cut(s)	44, 417, 552, 638, 653, 657
TseFI	GTSAC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	477, 688
VneI	GTGCAC	1 cut(s)	687
VspI	ATTAAT	4 cut(s)	417, 638, 653, 657
XapI	RAATTY	4 cut(s)	145, 152, 329, 464
XceI	RCATGY	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.