Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

20533979 .. 20537414

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1141700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGTTAGGAGGCCTGGTGTGATTGCCTTGTTTGATGTTGATGATACTCTCACAGCTCCAAGAAAGTTTGTTACTCCAGAAATGTTGGAGTGTATGAGAGAACTTAGGAAGGTTGTTACAGTAGGCATTGTGGGAGGATCTGACCTTACAAAGATAACGGAGCAGCTTGGCAAAACAGTTATTGATGACTATGATTATGTATTTACTGAGAATGGTCTTGTTGCTCACAAAGATAGGACGCTGATTGGCACCCAGAGCTTGAAGACATATCTTGGAGAAGACAAACTCAAGGAATTTATCAATTTTACGCTTCATTATATCGCAGACTTGGACATACCGATAAAGAGGGGCACATTTATAGAGTTCCGGAGTGGGATGCTTAATGTATCACCAATTGGGCGAAACTGTAGCCAAGAAGAAAGGGATGAATTTGAAAGATATGACAAGGTTCAGAACATACGCCCAAAAATGGTTTCTGTCCTCCGTGAAAAGTTTGGTCACCTTAACTTGATGTTTTCCATAGGAGGGCAGATAAGCTTTGATGTTTTCCCGCAAGGTTGGGACAAGACATACTGCTTGAGATACCTAGATGATTTTCAAGAAATCCATTTCTTTGGTGACAAAACTTACAAGGGAGGAAATGACCATGAAATCTATGAATCTGAAAGAACCGTAGGTCATACAGTTACGAACCCTGAAGATACAATCAAGCAGTGCACTGCTCTCTTCCTGAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

248

Amino Acids

28.4

Weight (kDa)

5.45

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	29 - 244	2.9e-109	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	296, 431
AcuI	CTGAAG	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	472, 528
AgsI	TTSAA	3 cut(s)	265, 437, 602
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	4 cut(s)	59, 169, 261, 540
AluI	AGCT	4 cut(s)	59, 169, 261, 540
Alw21I	GWGCWC	1 cut(s)	722
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	148
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	296, 431
AsuHPI	GGTGA	3 cut(s)	384, 494, 632
BaeGI	GKGCMC	2 cut(s)	356, 722
BanI	GGYRCC	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	272, 288
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	272, 288
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	275, 601
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 528
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	384, 433
BseLI	CCNNNNNNNGG	2 cut(s)	472, 528
BseMII	CTCAG	1 cut(s)	201
BseSI	GKGCMC	2 cut(s)	356, 722
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	472, 528
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	356, 722
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	251
BssMI	GATC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
Bst6I	CTCTTC	1 cut(s)	734
BstDEI	CTNAG	2 cut(s)	107, 210
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	384, 433
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	2 cut(s)	356, 722
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	2 cut(s)	272, 288
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	384, 433
BtsI	GCAGTG	2 cut(s)	720, 722
BtsIMutI	CAGTG	2 cut(s)	720, 722
CseI	GACGC	1 cut(s)	250
CviAII	CATG	1 cut(s)	650
CviJI	RGCY	7 cut(s)	5, 16, 59, 169, 261, 414, 540
CviKI_1	RGCY	7 cut(s)	5, 16, 59, 169, 261, 414, 540
DdeI	CTNAG	2 cut(s)	107, 210
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	720
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	653
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	1 cut(s)	649
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	391, 440
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	3 cut(s)	384, 494, 632
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	3 cut(s)	145, 456, 667
Hpy188III	TCNNGA	4 cut(s)	80, 370, 602, 733
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	5 cut(s)	124, 181, 410, 676, 688
HpyCH4V	TGCA	1 cut(s)	720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	107, 210
Hsp92II	CATG	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	64, 163
LpnPI	CCDG	6 cut(s)	3, 30, 93, 269, 383, 711
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	5 cut(s)	73, 118, 500, 620, 688
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	5 cut(s)	277, 293, 431, 713, 721
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	356, 722
MluCI	AATT	4 cut(s)	296, 304, 396, 431
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	6, 131, 342, 494, 521, 632
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	2 cut(s)	384, 507
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	500, 620
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	384, 507
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	356, 722
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	290, 580
SmoI	CTYRAG	2 cut(s)	290, 580
Sse9I	AATT	4 cut(s)	296, 304, 396, 431
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	1 cut(s)	590
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
TasI	AATT	4 cut(s)	296, 304, 396, 431
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	384, 507
Tru9I	TTAA	2 cut(s)	384, 507
TscAI	CASTG	2 cut(s)	722, 727
TseFI	GTSAC	2 cut(s)	500, 620
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	500, 620
TspDTI	ATGAA	4 cut(s)	305, 444, 666, 675
TspGWI	ACGGA	2 cut(s)	176, 476
TspRI	CASTG	2 cut(s)	722, 727
VneI	GTGCAC	1 cut(s)	718
XapI	RAATTY	2 cut(s)	296, 431
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.