Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

19849692 .. 19852566

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCATGTACTCATATTAACCAACAACGCCAGATTTATTGATGGCTATGATTATGTATTTTCTGAGAATGATCTTGTGGCTCACAAAGATGGGAAGCACATTGGCACCCAGACCATGTGTCAAAAAACCCCCATCAAGGTTGCTGCTTTACTGGCCAAGGAGCAAATGATGGGATCCTCCCTGTTGGGCAGAATACCTCCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

68

Amino Acids

7.56

Weight (kDa)

7.93

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	9 - 41	7.9e-06	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	168, 181
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	168, 181
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	4 cut(s)	35, 83, 140, 163
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	106, 175
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	70, 173
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	106, 175
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	70, 173
BssT1I	CCWWGG	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	73, 176
BstMBI	GATC	2 cut(s)	70, 173
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	5, 115, 202
CviJI	RGCY	3 cut(s)	45, 80, 155
CviKI_1	RGCY	3 cut(s)	45, 80, 155
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	72, 175
DpnII	GATC	2 cut(s)	70, 173
DriI	GACNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	8, 118, 205
FaiI	YATR	6 cut(s)	6, 14, 48, 54, 116, 203
FatI	CATG	3 cut(s)	4, 114, 201
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	8, 118, 205
Hpy188I	TCNGA	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	8, 118, 205
Kzo9I	GATC	2 cut(s)	70, 173
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	43, 122, 137, 194
Lsp1109I	GCAGC	1 cut(s)	130
MalI	GATC	2 cut(s)	72, 175
MboI	GATC	2 cut(s)	70, 173
MflI	RGATCY	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	2 cut(s)	187, 207
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	70, 173
NlaIII	CATG	3 cut(s)	8, 118, 205
NlaIV	GGNNCC	2 cut(s)	106, 175
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	106, 175
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	70, 173
SetI	ASST	2 cut(s)	141, 199
SgeI	CNNG	9 cut(s)	17, 42, 86, 121, 127, 148, 164, 169, 193
SmiMI	CAYNNNNRTG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	156
TatI	WGTACW	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseI	GCWGC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.