Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000278.1

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

67726 .. 73437

Gene Structure 5712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000278.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgcaattcatttatgttttattgggttgggagggttcggctgcaaattcacgagtactacttgatgccattagtagggacatggttatttatgactatgattatgtattttctaagaatggtcttgtggctcacaaagatgggaagctcattggcacccagagcttgaagtcacatcttggagatgataagctcaaggaatttatcaattttacacttcactatattgctgacttggacataccgataaagaggggtacatttattgggttccgaagtgggatgattaatgtatcaccaattgggcgaaactggagccaagaggaaagagatgaatttgaaagatatgagaagtcatgcagaacacctgagcttgaggagttgatctgctacacattggtgaggctcaagagcattcctgcagcacaggctgttaatgagctggctagcatcacatggaaggcaggcacatgtacctgcactcatgttgaactcattagcctcatcgctaggcattgtctgcaagggttgggcccttgggcctggagaatatgtgaagtaagtgtagcttgctgggcctcgctttctattgcgacatttttgctatcatcaccactcatctccttaacagaggagacagtgtggctcaccggtcacccaaaaggagagagaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

225

Amino Acids

25.31

Weight (kDa)

6.08

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	155
AcsI	RAATTY	3 cut(s)	46, 200, 335
AfaI	GTAC	3 cut(s)	57, 259, 475
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	470
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	169, 341, 491
AjnI	CCWGG	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	6 cut(s)	148, 165, 193, 373, 442, 569
AluI	AGCT	6 cut(s)	148, 165, 193, 373, 442, 569
Alw26I	GTCTC	1 cut(s)	629
AoxI	GGCC	3 cut(s)	532, 540, 576
ApaI	GGGCCC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	41, 422
ApoI	RAATTY	3 cut(s)	46, 200, 335
AseI	ATTAAT	1 cut(s)	288
AsiGI	ACCGGT	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	532, 533, 540, 576
AsuHPI	GGTGA	5 cut(s)	288, 412, 603, 640, 647
AsuNHI	GCTAGC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	28, 434
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	2 cut(s)	447, 510
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	2 cut(s)	42, 423
BlsI	GCNGC	2 cut(s)	43, 424
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	544
BmgT120I	GGNCC	4 cut(s)	532, 533, 540, 576
BmiI	GGNNCC	4 cut(s)	157, 272, 317, 534
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	55, 459
BmtI	GCTAGC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	334, 565
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	3 cut(s)	179, 392, 395
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	4 cut(s)	538, 568, 626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	392, 647
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	28, 434
BseYI	CCCAGC	1 cut(s)	573
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	534, 542, 578
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	534, 542, 578
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	534, 542, 578
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	157, 272, 317, 534
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	485
BspOI	GCTAGC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	640
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	444, 448, 466, 571
BstDEI	CTNAG	2 cut(s)	114, 369
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 428, 520, 575
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	28, 434
BsuRI	GGCC	3 cut(s)	534, 542, 578
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	4 cut(s)	444, 448, 466, 571
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	4 cut(s)	532, 533, 540, 576
Csp6I	GTAC	3 cut(s)	56, 258, 474
CspAI	ACCGGT	1 cut(s)	650
CviAII	CATG	5 cut(s)	82, 357, 456, 471, 485
CviQI	GTAC	3 cut(s)	56, 258, 474
DdeI	CTNAG	2 cut(s)	114, 369
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	653
EcoO109I	RGGNCCY	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	5 cut(s)	85, 360, 459, 474, 488
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	5 cut(s)	81, 356, 455, 470, 484
Fnu4HI	GCNGC	2 cut(s)	42, 423
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	42, 423
FspBI	CTAG	2 cut(s)	447, 510
GluI	GCNGC	2 cut(s)	42, 423
GsaI	CCCAGC	1 cut(s)	577
GsuI	CTGGAG	2 cut(s)	334, 565
HaeIII	GGCC	3 cut(s)	534, 542, 578
HapII	CCGG	1 cut(s)	651
Hin1II	CATG	5 cut(s)	85, 360, 459, 474, 488
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	5 cut(s)	288, 412, 603, 640, 647
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	2 cut(s)	51, 409
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4V	TGCA	6 cut(s)	4, 44, 360, 422, 480, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 428, 520, 575
HpyF3I	CTNAG	2 cut(s)	114, 369
Hsp92II	CATG	5 cut(s)	85, 360, 459, 474, 488
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	315
Lsp1109I	GCAGC	2 cut(s)	28, 434
LweI	GCATC	2 cut(s)	55, 459
MaeI	CTAG	2 cut(s)	447, 510
MaeIII	GTNAC	2 cut(s)	171, 653
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	6 cut(s)	5, 46, 200, 208, 300, 335
MnlI	CCTC	9 cut(s)	25, 246, 316, 370, 396, 512, 589, 625, 665
MseI	TTAA	3 cut(s)	288, 435, 626
MslI	CAYNNNNRTG	2 cut(s)	138, 398
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	162, 428, 520, 575
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	85, 360, 459, 474, 488
NlaIV	GGNNCC	4 cut(s)	157, 272, 317, 534
NmuCI	GTSAC	2 cut(s)	171, 653
NspI	RCATGY	1 cut(s)	474
OliI	CACNNNNGTG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	470
PctI	GAATGC	1 cut(s)	414
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	2 cut(s)	43, 424
PscI	ACATGT	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	542
PspEI	GGTNACC	1 cut(s)	653
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	4 cut(s)	157, 272, 317, 534
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	4 cut(s)	532, 533, 540, 576
PstI	CTGCAG	1 cut(s)	424
RsaI	GTAC	3 cut(s)	57, 259, 475
RsaNI	GTAC	3 cut(s)	56, 258, 474
RseI	CAYNNNNRTG	2 cut(s)	138, 398
SaqAI	TTAA	3 cut(s)	288, 435, 626
SatI	GCNGC	2 cut(s)	42, 423
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	4 cut(s)	532, 533, 540, 576
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	8 cut(s)	150, 167, 195, 370, 375, 444, 479, 571
SfaNI	GCATC	2 cut(s)	55, 459
SfcI	CTRYAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	2 cut(s)	138, 398
SmlI	CTYRAG	3 cut(s)	194, 374, 407
SmoI	CTYRAG	3 cut(s)	194, 374, 407
Sse9I	AATT	6 cut(s)	5, 46, 200, 208, 300, 335
SspMI	CTAG	2 cut(s)	447, 510
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	640
TasI	AATT	6 cut(s)	5, 46, 200, 208, 300, 335
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	3 cut(s)	288, 435, 626
Tru9I	TTAA	3 cut(s)	288, 435, 626
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	171, 653
TseI	GCWGC	2 cut(s)	41, 422
Tsp45I	GTSAC	2 cut(s)	171, 653
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	3 cut(s)	46, 200, 335
XceI	RCATGY	1 cut(s)	474
XspI	CTAG	2 cut(s)	447, 510
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.