Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

8897583 .. 8900380

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07910.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGTTAGGAGGCCTGGTGTGCTTGCCTTGTTTGATGTTGATGGGACTCTCACAGCTCCAAGAAAGGTTGTTACTCCAGAAATGTTGGGGTTTATGAGAGAACTTAGGAAGGTTGTCACAGTGGGCATTGTGGGAGGATCTGACCTTTCTAAGATAACCGAGCAGCTTGGCAAAACAGTTATTGATGACCATGATTATGTATTTTCCGAAAATGGTCTTGTGGCTCACAAAGATAGGACACTGATTGGCACCCAGAGCTTGAAGACATATCTTGGAGAAGACAAACTCAAGGAATTCATCAACTTTACGCTTCATTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGCTTAATGTATCACCAATTGGGAGAAACTGTAGCCAAGAAGAAAGGGATGAATTTGAAAAATATGACAAGGTTCAGAATATACGCCCAAAAATGGTTTCCGTCCTTCGTGAGAAGTTTGGTCACCTCAACCTGACATTTTCCATTGGAGGACAGATAAGTTTTGATGTTTTCCCGCAAGGTTGGGACAAGACATACTGCTTGAGATACCTAGATGATTTTCAAGAGATCCATTTCTTTGGTGACAAAACTTACAAGGGAGGAAATGACCACGAAATCTATGAATCTGAAAGAACCGTAGGTCATACAGTTTCCAGCCCCGAAGATACAATCAAGCAGTGCACAGCTCTCTTCCTGAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

248

Amino Acids

28.08

Weight (kDa)

5.83

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	148, 601
AcsI	RAATTY	2 cut(s)	296, 431
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	3 cut(s)	265, 437, 602
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	4 cut(s)	59, 169, 261, 725
AluI	AGCT	4 cut(s)	59, 169, 261, 725
Alw21I	GWGCWC	1 cut(s)	722
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	148, 601
AoxI	GGCC	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	296, 431
AsuHPI	GGTGA	3 cut(s)	384, 494, 632
BaeGI	GKGCMC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	740
BbsI	GAAGAC	2 cut(s)	272, 288
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	272, 288
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	2 cut(s)	275, 601
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	384, 433
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	722
BslFI	GGGAC	2 cut(s)	61, 578
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	61, 578
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	722, 740
Bsp143I	GATC	2 cut(s)	140, 606
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	148, 601
BspT107I	GGYRCC	1 cut(s)	251
BssMI	GATC	2 cut(s)	140, 606
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
Bst6I	CTCTTC	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	107, 153, 734
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	384, 433
BstKTI	GATC	2 cut(s)	143, 609
BstMBI	GATC	2 cut(s)	140, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 258
BstNI	CCWGG	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	2 cut(s)	272, 288
BstX2I	RGATCY	2 cut(s)	140, 606
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	2 cut(s)	140, 606
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	384, 433
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	3 cut(s)	129, 242, 722
Cac8I	GCNNGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	107, 153, 734
DpnI	GATC	2 cut(s)	142, 608
DpnII	GATC	2 cut(s)	140, 606
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	740
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	740
FaeI	CATG	1 cut(s)	197
FaqI	GGGAC	2 cut(s)	61, 578
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	391, 440
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	2 cut(s)	49, 662
HphI	GGTGA	3 cut(s)	384, 494, 632
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	5 cut(s)	145, 211, 371, 456, 667
Hpy188III	TCNNGA	4 cut(s)	80, 488, 602, 733
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	2 cut(s)	106, 494
HpyCH4III	ACNGT	5 cut(s)	124, 181, 410, 676, 688
HpyCH4V	TGCA	1 cut(s)	720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 258
HpyF3I	CTNAG	3 cut(s)	107, 153, 734
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	140, 606
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	3, 30, 93, 269, 524, 706
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	4 cut(s)	73, 118, 500, 620
MalI	GATC	2 cut(s)	142, 608
MboI	GATC	2 cut(s)	140, 606
MboII	GAAGA	5 cut(s)	277, 293, 431, 713, 721
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	140, 606
MhlI	GDGCHC	2 cut(s)	722, 740
MluCI	AATT	3 cut(s)	296, 396, 431
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	6, 131, 342, 515, 521, 632
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	22, 258
NdeII	GATC	2 cut(s)	140, 606
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	3 cut(s)	118, 500, 620
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	140, 606
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	140, 606
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	722, 740
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	290, 580
SmoI	CTYRAG	2 cut(s)	290, 580
Sse9I	AATT	3 cut(s)	296, 396, 431
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	1 cut(s)	590
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
TasI	AATT	3 cut(s)	296, 396, 431
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	3 cut(s)	129, 249, 722
TseFI	GTSAC	3 cut(s)	118, 500, 620
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	3 cut(s)	118, 500, 620
TspDTI	ATGAA	4 cut(s)	289, 305, 444, 675
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	129, 249, 722
VneI	GTGCAC	1 cut(s)	718
XapI	RAATTY	2 cut(s)	296, 431
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.