Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

34123873 .. 34127855

Gene Structure 3983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGCACCGGCGAGCTTCTCAACATCGACCCCCAAGAGCTCCAATTCCCTTTTGAACTGAAGAAGCAGATCTCGTGCTCTCTGCAACTCTCCAACAAGACCGATGACTATGTGGCTTTTAAGGTAAAGACAACAAATCCCAAAAAGTATTGTGTAAGACCCAACACTGGGGTTGTGTTGCCAAGGTCCACATGTGATGTTATAGTGACTATGCAAGCGCAAAAGGAGAAGCCGACGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGTGTAGTTGCCAGCCCCGGGGCTACTACCAAGGATATCACCCCAGAGATGTTCAATAAGGAGTCCGGGCATAATGTCGAAGAGTGCAAGTTGAAGGTTAACTATGTTGACCCGCCTAGGCCCCCATCTCCGGTTCGGGAAGGTTCAGAGGAAGGTTCATCACCTAGGGCCTCAGTGGACAATGGGAATTTTAATGATTCTGAGTTCAAAGCTGCTCCAAGAGCTTTTGGCGAGAGACATGAGCCTCAAGATAACTCTGAGGCTAAGACTCTTATTGCGAAGCTGACCGATGAGAGAAATTCTGCTATTCAGCAAAATAATAGGCTTCAACAAGAACTGGATCTTTTGAGGAGAGAGGCCAACACAAGCCGTGGTGGTATTGCATTTATATATGTTGTTATAGTGGGTTTGATTGGCATTATTTTGGGGTACATTCTGAAGAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

239

Amino Acids

26.63

Weight (kDa)

7.58

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 111	2e-33	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 78	6.1e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	457, 568
AcuI	CTGAAG	2 cut(s)	80, 251
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	56, 325, 364, 478, 599
AluBI	AGCT	5 cut(s)	16, 40, 482, 494, 553
AluI	AGCT	5 cut(s)	16, 40, 482, 494, 553
Alw21I	GWGCWC	3 cut(s)	8, 42, 80
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	1 cut(s)	618
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	389, 438, 627
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	457, 568
AspA2I	CCTAGG	2 cut(s)	386, 434
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	186, 390, 438
AsuC2I	CCSGG	3 cut(s)	288, 289, 337
AsuHPI	GGTGA	2 cut(s)	301, 423
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	2 cut(s)	386, 434
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	3 cut(s)	8, 42, 80
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	624
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BcnI	CCSGG	3 cut(s)	288, 289, 337
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	387, 435
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	483
BlnI	CCTAGG	2 cut(s)	386, 434
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	3 cut(s)	288, 289, 337
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	186, 390, 438
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	3 cut(s)	288, 289, 337
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	3 cut(s)	288, 289, 337
BsaJI	CCNNGG	8 cut(s)	182, 286, 287, 288, 300, 386, 434, 640
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	172, 612
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	8 cut(s)	182, 286, 287, 288, 300, 386, 434, 640
BseLI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	456, 462, 519
BseNI	ACTGG	2 cut(s)	172, 612
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	3 cut(s)	391, 440, 629
BsiHKAI	GWGCWC	3 cut(s)	8, 42, 80
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	4 cut(s)	9, 288, 336, 401
BslI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	391, 440, 629
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	8, 42, 80
Bsp143I	GATC	2 cut(s)	69, 610
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	391, 440, 629
BspCNI	CTCAG	3 cut(s)	455, 463, 520
BspLI	GGNNCC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	172, 612
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	8 cut(s)	182, 286, 287, 288, 300, 386, 434, 640
BssMI	GATC	2 cut(s)	69, 610
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	4 cut(s)	182, 300, 386, 434
Bst2BI	CACGAG	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	14, 216, 283
BstDEI	CTNAG	4 cut(s)	442, 471, 528, 534
BstDSI	CCRYGG	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	72, 613
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	2 cut(s)	69, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	3 cut(s)	286, 287, 335
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	69, 610
BstYI	RGATCY	2 cut(s)	69, 610
BsuRI	GGCC	3 cut(s)	391, 440, 629
BtgI	CCRYGG	1 cut(s)	640
BtsIMutI	CAGTG	2 cut(s)	165, 450
Cac8I	GCNNGC	3 cut(s)	14, 216, 283
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	186, 390, 438
Cfr9I	CCCGGG	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	3 cut(s)	192, 509, 717
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	4 cut(s)	442, 471, 528, 534
DpnI	GATC	2 cut(s)	71, 612
DpnII	GATC	2 cut(s)	69, 610
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	4 cut(s)	182, 300, 386, 434
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	80, 251
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	2 cut(s)	390, 438
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	4 cut(s)	182, 300, 386, 434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	4 cut(s)	182, 300, 386, 434
FaeI	CATG	3 cut(s)	195, 512, 720
FatI	CATG	3 cut(s)	191, 508, 716
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	387, 435
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	3 cut(s)	391, 440, 629
HapII	CCGG	4 cut(s)	9, 288, 336, 401
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	195, 512, 720
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	370, 379
HindII	GTYRAC	2 cut(s)	370, 379
HinfI	GANTC	3 cut(s)	332, 467, 538
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	4 cut(s)	9, 288, 336, 401
HphI	GGTGA	2 cut(s)	301, 423
Hpy166II	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy188I	TCNGA	5 cut(s)	270, 418, 472, 529, 708
Hpy188III	TCNNGA	2 cut(s)	407, 518
Hpy8I	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	272, 358, 404, 416
HpyCH4V	TGCA	6 cut(s)	85, 214, 244, 249, 357, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	4 cut(s)	442, 471, 528, 534
Hsp92II	CATG	3 cut(s)	195, 512, 720
HspAI	GCGC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	69, 610
LmnI	GCTCC	2 cut(s)	45, 490
LpnPI	CCDG	8 cut(s)	22, 153, 295, 301, 327, 349, 414, 593
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	387, 435
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	71, 612
MboI	GATC	2 cut(s)	69, 610
MboII	GAAGA	3 cut(s)	73, 257, 362
MflI	RGATCY	2 cut(s)	69, 610
MhlI	GDGCHC	3 cut(s)	8, 42, 80
MluCI	AATT	3 cut(s)	44, 457, 568
MlyI	GAGTC	2 cut(s)	341, 532
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	412, 451, 523, 525, 612, 619
MseI	TTAA	3 cut(s)	120, 369, 462
MspI	CCGG	4 cut(s)	9, 288, 336, 401
MspR9I	CCNGG	3 cut(s)	288, 289, 337
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	3 cut(s)	288, 289, 337
NdeII	GATC	2 cut(s)	69, 610
NlaIII	CATG	3 cut(s)	195, 512, 720
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	195
PciI	ACATGT	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	340, 532
PpsI	GAGTC	2 cut(s)	340, 532
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	3 cut(s)	186, 390, 438
PsuI	RGATCY	2 cut(s)	69, 610
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	120, 369, 462
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	2 cut(s)	69, 610
Sau96I	GGNCC	3 cut(s)	186, 390, 438
SchI	GAGTC	2 cut(s)	341, 532
ScrFI	CCNGG	3 cut(s)	288, 289, 337
SduI	GDGCHC	3 cut(s)	8, 42, 80
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	186
SmaI	CCCGGG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	44, 457, 568
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	387, 435
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	286, 287, 335
StyI	CCWWGG	4 cut(s)	182, 300, 386, 434
TaqI	TCGA	2 cut(s)	27, 348
TaqII	GACCGA	2 cut(s)	116, 572
TasI	AATT	3 cut(s)	44, 457, 568
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	120, 369, 462
Tru9I	TTAA	3 cut(s)	120, 369, 462
TscAI	CASTG	2 cut(s)	172, 450
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	251
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	2 cut(s)	172, 450
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	457, 568
XceI	RCATGY	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	287
XmaJI	CCTAGG	2 cut(s)	386, 434
XspI	CTAG	2 cut(s)	387, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.