Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

8756856 .. 8764905

Gene Structure 8050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAGATCATGCTTGCTGGTGAGTTCTGGCAAGTTATTTATGACTATGATTATGTATTTTCTAAGAATGGTCTTGTGGCTCACAAAGATGAGAAGCTCATTGGCACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGCTCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCAATTGGGCGAAACTGGAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGAGAAGGGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

103

Amino Acids

12.14

Weight (kDa)

5.3

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	11 - 101	1.3e-41	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	149, 284
AfaI	GTAC	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	118, 290
AluBI	AGCT	3 cut(s)	97, 114, 142
AluI	AGCT	3 cut(s)	97, 114, 142
ApoI	RAATTY	2 cut(s)	149, 284
AseI	ATTAAT	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	32, 237
BanI	GGYRCC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	106, 266
BpmI	CTGGAG	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	106, 266
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 111
BstSFI	CTRYAG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	80, 97, 114, 142, 267
CviKI_1	RGCY	5 cut(s)	80, 97, 114, 142, 267
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 42, 48, 54, 174, 191, 297, 310
FatI	CATG	1 cut(s)	9
FokI	GGATG	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	283
Hin1II	CATG	1 cut(s)	13
HphI	GGTGA	2 cut(s)	32, 237
Hpy188I	TCNGA	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 111
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	4 cut(s)	3, 13, 122, 247
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	4 cut(s)	149, 157, 249, 284
MnlI	CCTC	2 cut(s)	195, 265
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	10, 111
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	106, 266
NmuCI	GTSAC	1 cut(s)	120
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	106, 266
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	6
SetI	ASST	3 cut(s)	99, 116, 144
SfcI	CTRYAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	149, 157, 249, 284
TasI	AATT	4 cut(s)	149, 157, 249, 284
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	2 cut(s)	149, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.