Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

34128459 .. 34130845

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCCAAACACTCTGATCCCTCAGACGAAGAAACCCCCGAGGACTCGAGCTCAGGCTCAGAGGAACAAAACCCACAAGATGGTGGTGTTCCAGAGTACGAGAAGCAGAGGCAAGCGAGAATTGCACACAACAGGGCCAGAATGGAGGCTCTGGGTCTGCCCAAAATCGCTTCCTCTCTAATGGGTTCGGCCCAGAATGCGACGAAGAGGAAGAGGAAGGGAAAAGCCAAGGTCTTGGAGGAGGAGGACGACGATGATGAGTATAGGCCTGAAGAGGCTTCTTCTAGTGAAGACGAAGCTAATGATGAGGATTTTGAGGATGAAAAATCATCTAGTGCACGTAAGAAAAAGAATAAAGGTTCAAAACCTAAAAAGGCTCGTTCAAGAAGAAGTAGTTTGAGCAACTCGGATTACCTTGATGATGATGAGGCTTTGAAGCAAGCAATTGCTCTTTCATTGCAAGATTCTGCTGTTTCAGGTGTGGTAAAAGCTAATGTTAATGAAAGAAAAGGAGAGAATCAAATTCAGCAAGTTTCAGGGAGGAAGAGGAAAAACTCGCAGTTTGCTAGTCGGCTGCAGATGACAGAGGATGAGTTTGTTTTGCACTTCTTTCAGTTTGATGAGAAATGCAATGGGGGAATTTCTGCTAGAGATTTAGAAAGAGTAGCTATTGCTCATGATTTTATGTGGACTGATAAGGAGGTGGCTGACATGATTCATCTCTTTGATAGTGATGGAGATGCAAAGCTAAGTCTTGAAGATTTTCGGAAGATTGTTGTTCGCTGCAACATGATAAAAGCCCCTGAAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

271

Amino Acids

30.46

Weight (kDa)

5.16

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	203 - 258	7.1e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	3 cut(s)	522, 639, 808
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	363, 384, 436, 758
AluBI	AGCT	5 cut(s)	51, 299, 491, 668, 748
AluI	AGCT	5 cut(s)	51, 299, 491, 668, 748
Alw21I	GWGCWC	2 cut(s)	53, 340
Alw44I	GTGCAC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	38, 46
AoxI	GGCC	3 cut(s)	135, 189, 266
ApaLI	GTGCAC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	574, 783
ApoI	RAATTY	3 cut(s)	522, 639, 808
Asp700I	GAANNNNTTC	1 cut(s)	762
AspS9I	GGNCC	2 cut(s)	135, 190
AvaI	CYCGRG	2 cut(s)	38, 46
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	53, 340
BbvI	GCAGC	2 cut(s)	561, 770
BccI	CCATC	2 cut(s)	74, 728
BfaI	CTAG	4 cut(s)	285, 333, 567, 648
BfmI	CTRYAG	1 cut(s)	575
BisI	GCNGC	2 cut(s)	575, 784
BlsI	GCNGC	2 cut(s)	576, 785
BmeT110I	CYCGRG	2 cut(s)	38, 46
BmgT120I	GGNCC	2 cut(s)	135, 190
BmsI	GCATC	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	39, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse3DI	GCAATG	2 cut(s)	455, 637
BseDI	CCNNGG	2 cut(s)	39, 228
BseGI	GGATG	2 cut(s)	325, 595
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	455, 637
BseMII	CTCAG	3 cut(s)	36, 66, 72
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	561, 770
BshFI	GGCC	3 cut(s)	137, 191, 268
BsiHKAI	GWGCWC	2 cut(s)	53, 340
BsiHKCI	CYCGRG	2 cut(s)	38, 46
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	137, 191, 268
BsoBI	CYCGRG	2 cut(s)	38, 46
Bsp1286I	GDGCHC	2 cut(s)	53, 340
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	137, 191, 268
BspCNI	CTCAG	3 cut(s)	35, 65, 71
BspHI	TCATGA	2 cut(s)	676, 812
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	455, 637
BssECI	CCNNGG	2 cut(s)	39, 228
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	4 cut(s)	200, 206, 267, 539
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	114, 441
BstDEI	CTNAG	4 cut(s)	22, 52, 58, 749
BstF5I	GGATG	2 cut(s)	325, 595
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 197
BstSFI	CTRYAG	1 cut(s)	575
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	561, 770
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	137, 191, 268
BtsCI	GGATG	2 cut(s)	325, 595
Cac8I	GCNNGC	2 cut(s)	114, 441
CciI	TCATGA	2 cut(s)	676, 812
Cfr13I	GGNCC	2 cut(s)	135, 190
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	677, 712, 790, 813
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	4 cut(s)	22, 52, 58, 749
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	200, 206, 267, 539
EarI	CTCTTC	4 cut(s)	200, 206, 267, 539
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	2 cut(s)	38, 46
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	680, 715, 793, 816
FaiI	YATR	6 cut(s)	264, 678, 686, 713, 791, 814
FatI	CATG	4 cut(s)	676, 711, 789, 812
Fnu4HI	GCNGC	2 cut(s)	575, 784
FokI	GGATG	2 cut(s)	332, 602
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	575, 784
FspBI	CTAG	4 cut(s)	285, 333, 567, 648
GluI	GCNGC	2 cut(s)	575, 784
HaeIII	GGCC	3 cut(s)	137, 191, 268
Hin1II	CATG	4 cut(s)	680, 715, 793, 816
HinfI	GANTC	4 cut(s)	44, 464, 517, 715
Hpy166II	GTNNAC	2 cut(s)	338, 690
Hpy188I	TCNGA	5 cut(s)	16, 25, 61, 409, 768
Hpy188III	TCNNGA	5 cut(s)	92, 384, 677, 755, 813
Hpy8I	GTNNAC	2 cut(s)	338, 690
Hpy99I	CGWCG	2 cut(s)	205, 254
HpyAV	CCTTC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	8 cut(s)	125, 338, 460, 577, 604, 630, 743, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 197
HpyF3I	CTNAG	4 cut(s)	22, 52, 58, 749
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	680, 715, 793, 816
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	39, 105, 118, 137, 151, 206, 282, 462, 522
Lsp1109I	GCAGC	2 cut(s)	561, 770
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	4 cut(s)	285, 333, 567, 648
MaeII	ACGT	1 cut(s)	340
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	53, 340
MluCI	AATT	5 cut(s)	120, 444, 522, 639, 808
MlyI	GAGTC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	1 cut(s)	498
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	122, 197
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	680, 715, 793, 816
PaeR7I	CTCGAG	1 cut(s)	46
PagI	TCATGA	2 cut(s)	676, 812
PceI	AGGCCT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	464, 517, 715
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	576, 785
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	135, 190
PspXI	VCTCGAGB	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	579
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	575, 784
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	135, 190
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	53, 340
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	575
Sfr274I	CTCGAG	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	5 cut(s)	120, 444, 522, 639, 808
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	4 cut(s)	285, 333, 567, 648
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	47
TasI	AATT	5 cut(s)	120, 444, 522, 639, 808
TfiI	GAWTC	3 cut(s)	464, 517, 715
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseI	GCWGC	2 cut(s)	574, 783
TspDTI	ATGAA	5 cut(s)	336, 444, 516, 707, 801
Van91I	CCANNNNNTGG	1 cut(s)	80
VneI	GTGCAC	1 cut(s)	336
XapI	RAATTY	3 cut(s)	522, 639, 808
XhoI	CTCGAG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	4 cut(s)	285, 333, 567, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.