Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

21306949 .. 21310389

Gene Structure 3441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGTCAGGAAGCCTGGTGTGATTGCCTTGTTTGATGTTGATGGGACTCTCACAGCTCCTAGAAAGGCGGTTACTCCAGAAATGTTGGGGTTCATTCGAGAACTTAGGAAGGCTGTTACAGTGGGAATAGTTGGAGGATCTGACCTTTCTAAGATAACGGAGCAGCTTGGAAGGACAGTTATTGATGACTATGATTATGTATTTTCTGAGAATGGACTTGTGGCTCACAAAGACAGGACACTGATTGGCACCCAGAGCTTGAAGACATTTCTTGGAGAAGAGAAGCTGAAGGAATTTATCAATTTTACACTTCATTATATCGCAGACTTGGACATACCTATAAAGAGGGGTACATTTATAGAGTTCCGAAGTGGGATGCTTAATGTATCACCAATTGGGAGAAACTGTAGCCAAGAAGAAAGGGATGAATTTGAAAGATTTGACAAGGTTCAGAATATACGCCCAAAAATGGTATCCATCCTTCGCGAGAAGTTTGCTCACCTTAACTTGACATTTTCCATAGGAGGACAGATAAGCTTTGATGTTTTCCCTCAAGGTTGGGACAAGACATACTGCTTGAGATACCTAGAGAAGTTTCAAGAAATCCATTTCTTTGGTGACAAAACTTACAAGGGAGGAAATGACCATGAAATTTATGAATCTGAACGAACCGTAGGTCATACAGTTACCAGCCCTGAAGATACAATCAAGCAGTGCAAAGCTCTCTTTCTGAGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

248

Amino Acids

28.14

Weight (kDa)

6.33

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	489
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	296, 431, 654
AcuI	CTGAAG	2 cut(s)	311, 720
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	3 cut(s)	265, 437, 602
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	6 cut(s)	59, 169, 261, 289, 540, 725
AluI	AGCT	6 cut(s)	59, 169, 261, 289, 540, 725
AlwI	GGATC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	3 cut(s)	296, 431, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
AsuHPI	GGTGA	3 cut(s)	384, 494, 632
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	740
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	38, 488
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	63, 590
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	540, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	384, 433, 480
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	201, 725
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	489
BshNI	GGYRCC	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	61, 578
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	61, 578
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp143I	GATC	1 cut(s)	140
Bsp68I	TCGCGA	1 cut(s)	489
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	202, 726
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	251
BssMI	GATC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	107, 153, 210, 734
BstF5I	GGATG	3 cut(s)	384, 433, 480
BstFNI	CGCG	1 cut(s)	489
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	384, 433, 480
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	3 cut(s)	129, 242, 722
BtuMI	TCGCGA	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	1 cut(s)	650
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	4 cut(s)	107, 153, 210, 734
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	311, 720
EcoRII	CCWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	740
FaeI	CATG	1 cut(s)	653
FaqI	GGGAC	2 cut(s)	61, 578
FatI	CATG	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	3 cut(s)	391, 440, 467
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	2 cut(s)	63, 590
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	2 cut(s)	49, 662
HphI	GGTGA	3 cut(s)	384, 494, 632
Hpy188I	TCNGA	6 cut(s)	145, 211, 371, 456, 667, 735
Hpy188III	TCNNGA	5 cut(s)	10, 80, 101, 488, 602
HpyAV	CCTTC	4 cut(s)	106, 168, 286, 494
HpyCH4III	ACNGT	5 cut(s)	124, 181, 410, 676, 688
HpyCH4V	TGCA	1 cut(s)	720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	4 cut(s)	107, 153, 210, 734
Hsp92II	CATG	1 cut(s)	653
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	64, 163
LpnPI	CCDG	7 cut(s)	3, 30, 93, 223, 269, 706, 711
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	63, 590
MaeIII	GTNAC	4 cut(s)	73, 118, 620, 688
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	277, 293, 431, 713
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	740
MluCI	AATT	5 cut(s)	296, 304, 396, 431, 654
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	131, 342, 521, 564, 632
MseI	TTAA	2 cut(s)	384, 507
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	620
NruI	TCGCGA	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	140
RruI	TCGCGA	1 cut(s)	489
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	384, 507
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	555, 580
SmoI	CTYRAG	2 cut(s)	555, 580
Sse9I	AATT	5 cut(s)	296, 304, 396, 431, 654
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	63, 590
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	5 cut(s)	124, 181, 410, 676, 688
TaqI	TCGA	1 cut(s)	100
TasI	AATT	5 cut(s)	296, 304, 396, 431, 654
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	384, 507
Tru9I	TTAA	2 cut(s)	384, 507
TscAI	CASTG	3 cut(s)	129, 249, 722
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	5 cut(s)	85, 305, 444, 666, 675
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	129, 249, 722
XapI	RAATTY	3 cut(s)	296, 431, 654
XspI	CTAG	2 cut(s)	63, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.