Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

48854149 .. 48857441

Gene Structure 3293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTAGGATTCATGCGAGAACTCAGGAAGGTTGTTACAGTGGGCATTGTGGGAGGATCCAACCTTTCTAAGATAACAGAGCAGCTTGGAAAGACAGTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGGGAAGCTCATTGACACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGATCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCGATTGGGCGAAACTGCAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGACAAGGTTCACAACGTACGCCCCAAAATGATTTCTATCCTTCGTGAGAAGTTTGCTCACTTTAACCTGACATTTTCCATTGGAGGACAGATAAGCTTTGATGTTTTTCCTCAAGGTTGGGACAAGACATACTGCTTGAGATACCTAGAGGAATTTCAAGAAATCCATTTCTTCGGTGACAAAACTTACAAGGGAGGAAATGACCATGAAATTTATGAATCTGAACGAACTGTGGGTCATACAGTTACCAGCCCTGAAGATACAGTCGAGCAGTGTAAAGCTCTCTTCTTCAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

219

Amino Acids

25.26

Weight (kDa)

5.92

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	2 - 217	6.7e-111	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	51, 64
AcsI	RAATTY	4 cut(s)	212, 347, 512, 570
AcuI	CTGAAG	2 cut(s)	634, 636
AfaI	GTAC	2 cut(s)	271, 378
AgsI	TTSAA	3 cut(s)	181, 353, 518
AluBI	AGCT	5 cut(s)	85, 160, 177, 456, 641
AluI	AGCT	5 cut(s)	85, 160, 177, 456, 641
AlwI	GGATC	2 cut(s)	51, 64
AlwNI	CAGNNNCTG	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	82, 327
ApoI	RAATTY	4 cut(s)	212, 347, 512, 570
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AseI	ATTAAT	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	116, 300, 548
BamHI	GGATCC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	94, 339
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	2 cut(s)	83, 328
BlsI	GCNGC	2 cut(s)	84, 329
BmiI	GGNNCC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	456, 517
BsaBI	GATNNNNATC	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	395
BseGI	GGATG	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	37, 117
BseXI	GCAGC	2 cut(s)	94, 339
BsiWI	CGTACG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	56, 204
BspCNI	CTCAG	2 cut(s)	36, 118
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	329
BspPI	GGATC	2 cut(s)	51, 64
BssMI	GATC	2 cut(s)	56, 204
Bst4CI	ACNGT	5 cut(s)	40, 97, 592, 604, 625
Bst6I	CTCTTC	1 cut(s)	650
BstDEI	CTNAG	3 cut(s)	23, 69, 126
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	59, 207
BstMBI	GATC	2 cut(s)	56, 204
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	94, 339
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	2 cut(s)	45, 638
CaiI	CAGNNNCTG	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	270, 377
CviAII	CATG	2 cut(s)	13, 566
CviJI	RGCY	8 cut(s)	85, 143, 160, 177, 330, 456, 612, 641
CviKI_1	RGCY	8 cut(s)	85, 143, 160, 177, 330, 456, 612, 641
CviQI	GTAC	2 cut(s)	270, 377
DdeI	CTNAG	3 cut(s)	23, 69, 126
DpnI	GATC	2 cut(s)	58, 206
DpnII	GATC	2 cut(s)	56, 204
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	634, 636
FaeI	CATG	2 cut(s)	16, 569
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	2 cut(s)	12, 565
Fnu4HI	GCNGC	2 cut(s)	83, 328
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	83, 328
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	83, 328
Hin1II	CATG	2 cut(s)	16, 569
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	2 cut(s)	9, 578
HphI	GGTGA	3 cut(s)	116, 300, 548
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	127, 287, 583
Hpy188III	TCNNGA	3 cut(s)	25, 404, 518
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	22, 410
HpyCH4III	ACNGT	5 cut(s)	40, 97, 592, 604, 625
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	327
HpyF3I	CTNAG	3 cut(s)	23, 69, 126
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	16, 569
Kzo9I	GATC	2 cut(s)	56, 204
LpnPI	CCDG	5 cut(s)	10, 185, 440, 622, 627
Lsp1109I	GCAGC	2 cut(s)	94, 339
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	5 cut(s)	34, 104, 183, 536, 604
MalI	GATC	2 cut(s)	58, 206
MboI	GATC	2 cut(s)	56, 204
MboII	GAAGA	4 cut(s)	523, 629, 637, 640
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	5 cut(s)	212, 220, 347, 512, 570
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	7 cut(s)	47, 258, 328, 437, 480, 502, 548
MseI	TTAA	2 cut(s)	300, 423
MslI	CAYNNNNRTG	1 cut(s)	150
NdeII	GATC	2 cut(s)	56, 204
NlaIII	CATG	2 cut(s)	16, 569
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	3 cut(s)	104, 183, 536
PfeI	GAWTC	2 cut(s)	9, 578
Pfl23II	CGTACG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	84, 329
PshBI	ATTAAT	1 cut(s)	300
PspLI	CGTACG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	2 cut(s)	271, 378
RsaNI	GTAC	2 cut(s)	270, 377
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	300, 423
SatI	GCNGC	2 cut(s)	83, 328
Sau3AI	GATC	2 cut(s)	56, 204
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	471, 496
SmoI	CTYRAG	2 cut(s)	471, 496
Sse9I	AATT	5 cut(s)	212, 220, 347, 512, 570
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	5 cut(s)	40, 97, 592, 604, 625
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	627
TasI	AATT	5 cut(s)	212, 220, 347, 512, 570
TfiI	GAWTC	2 cut(s)	9, 578
Tru1I	TTAA	2 cut(s)	300, 423
Tru9I	TTAA	2 cut(s)	300, 423
TscAI	CASTG	2 cut(s)	45, 638
TseFI	GTSAC	3 cut(s)	104, 183, 536
TseI	GCWGC	2 cut(s)	82, 327
Tsp45I	GTSAC	3 cut(s)	104, 183, 536
TspDTI	ATGAA	3 cut(s)	360, 582, 591
TspRI	CASTG	2 cut(s)	45, 638
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	4 cut(s)	212, 347, 512, 570
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.