Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

15895902 .. 15898431

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14070.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGAGAACTTAGGAAGGTTGTTACAGTAGGCATTGTGGGAGGGTCTGACCTTTCAAAGATAACGGAGCAGCTTGGCAAAACAGTTATGGATGACTATGATTATGTATTTTCTGAGAATGGTCTTGTTGCTCACAAAGATAGGACGCTGATTGGCACCCAGAGCTTGAAGACATATCTTGGAGAAGACAAACTCAAGGAATTTATCAATTTTACGCTTCATTATATCGCAGACTTGGACATACCGATAAAGAGGGGTACATTTATAGAGTTCCGAAATGGGATGCTTAATGTCTCACCAATTGGGCGAAACTGTAGCCAAGAAGAAAGGGATGAATTTGAAAGATATGACAAGGTTCAGAACATACGCCCAAAAATGGTTTCCGTCCTCCGCGAAAAGTTTGGTCACCTTAACTTGACGTTTTCCATAGGAGGGCAGATAAGTTTTGATGTTTTCCCGCAAGGTTGGGACAAGACATACTGCTTGAGATATCTAGATGATTTTCAAGAAATCCATTTCTTTGGTGACAAAACTTACAAGGGAGGAAATGACCATGAAATCTATGAATCTGAAAGAACCGTAGGTCATACAGTTACGAGCCCTGAAGATACAATCAAGCAGTGCACTGCTCTCTTCCTGAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

216

Amino Acids

24.78

Weight (kDa)

5.56

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	393
AciI	CCGC	2 cut(s)	391, 458
AcsI	RAATTY	2 cut(s)	200, 335
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	376, 432
AgsI	TTSAA	4 cut(s)	57, 169, 341, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	2 cut(s)	73, 165
AluI	AGCT	2 cut(s)	73, 165
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	622
ApaLI	GTGCAC	1 cut(s)	622
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	200, 335
AsuHPI	GGTGA	3 cut(s)	288, 398, 536
BaeGI	GKGCMC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	2 cut(s)	176, 192
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	2 cut(s)	176, 192
BpuEI	CTTGAG	2 cut(s)	179, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 432
BseGI	GGATG	3 cut(s)	97, 288, 337
BseLI	CCNNNNNNNGG	2 cut(s)	376, 432
BseMII	CTCAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	376, 432
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	602, 626
BspACI	CCGC	2 cut(s)	391, 458
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
Bst4CI	ACNGT	5 cut(s)	28, 85, 314, 580, 592
Bst6I	CTCTTC	1 cut(s)	638
BstDEI	CTNAG	2 cut(s)	11, 114
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	97, 288, 337
BstFNI	CGCG	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	2 cut(s)	176, 192
BstXI	CCANNNNNNTGG	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	97, 288, 337
BtsI	GCAGTG	2 cut(s)	624, 626
BtsIMutI	CAGTG	2 cut(s)	624, 626
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	554
CviJI	RGCY	4 cut(s)	73, 165, 318, 600
CviKI_1	RGCY	4 cut(s)	73, 165, 318, 600
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	11, 114
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	624
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	1 cut(s)	557
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	3 cut(s)	104, 295, 344
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	1 cut(s)	566
HphI	GGTGA	3 cut(s)	288, 398, 536
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	5 cut(s)	49, 115, 275, 360, 571
Hpy188III	TCNNGA	3 cut(s)	494, 506, 637
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	5 cut(s)	28, 85, 314, 580, 592
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	11, 114
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	2 cut(s)	173, 615
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	4 cut(s)	22, 404, 524, 592
MboII	GAAGA	5 cut(s)	181, 197, 335, 617, 625
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	602, 626
MluCI	AATT	4 cut(s)	200, 208, 300, 335
MnlI	CCTC	5 cut(s)	35, 246, 398, 425, 536
MseI	TTAA	2 cut(s)	288, 411
MunI	CAATTG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	404, 524
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	1 cut(s)	72
PspEI	GGTNACC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	288, 411
SatI	GCNGC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	602, 626
SetI	ASST	9 cut(s)	21, 54, 75, 167, 357, 411, 422, 466, 586
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	194, 484
SmoI	CTYRAG	2 cut(s)	194, 484
Sse9I	AATT	4 cut(s)	200, 208, 300, 335
SsiI	CCGC	2 cut(s)	391, 458
SspMI	CTAG	1 cut(s)	494
TaaI	ACNGT	5 cut(s)	28, 85, 314, 580, 592
TaiI	ACGT	1 cut(s)	422
TasI	AATT	4 cut(s)	200, 208, 300, 335
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	288, 411
Tru9I	TTAA	2 cut(s)	288, 411
TscAI	CASTG	2 cut(s)	626, 631
TseFI	GTSAC	2 cut(s)	404, 524
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	2 cut(s)	404, 524
TspDTI	ATGAA	4 cut(s)	209, 348, 570, 579
TspGWI	ACGGA	2 cut(s)	80, 373
TspRI	CASTG	2 cut(s)	626, 631
VneI	GTGCAC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	200, 335
XbaI	TCTAGA	1 cut(s)	493
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.