Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

20689056 .. 20691932

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGTTATGAAGCCTGGAGTGATTGCCTTGTTTGATGTTGATGGGACTCTCACTGCTCCCAGAAAGGATGTTACTCCGCAAATGTTAGGATTCATGCGAGAACTCAGGAAGGTTGTTACGGTGGGCATTGTGGGAGGATCCAACCTTTCTAAGATAACAGAGCAGCTTGGAAAGACAGTTATGGGTGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGGGAAGCTCATTGGCACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGCTCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCGATTGGGAGAAACTGTAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGACAAGGTTCACAACGTACGCCCCAAAATGATTTCTATCCTTCGTGAGAAGTTTGCTCACTTTAACCTAACATTTTCCATTGGAGGACAGATAAGCTTTGATGTTTTTCCTCAAGGTTGGGACAAGACATACTGCTTGAGATACCTAGAGGAATTTCAAGAAATCCATTTCTTCGGTGACAAAACTTACAAGGGAGGAAATGACCATGAAATTTATGAATCTGAACGAACTGTGGGTCATACAGTTACCAGCCCTGAAGATACAGTCGAGCAGTGTAAAGCTCTCTTCTTCAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

248

Amino Acids

28.15

Weight (kDa)

6.08

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_3	PF08282	11 - 203	1.8e-06	haloacid dehalogenase-like hydrolase
PMM	PF03332	30 - 245	2.9e-111	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	135, 148
AcsI	RAATTY	4 cut(s)	296, 431, 596, 654
AcuI	CTGAAG	2 cut(s)	718, 720
AfaI	GTAC	2 cut(s)	355, 462
AgsI	TTSAA	3 cut(s)	265, 437, 602
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	6 cut(s)	169, 244, 261, 289, 540, 725
AluI	AGCT	6 cut(s)	169, 244, 261, 289, 540, 725
AlwI	GGATC	2 cut(s)	135, 148
AlwNI	CAGNNNCTG	1 cut(s)	741
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	4 cut(s)	296, 431, 596, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
AseI	ATTAAT	1 cut(s)	384
AsuHPI	GGTGA	3 cut(s)	200, 384, 632
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	38, 230
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	142, 253
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	275, 540, 601
BsaBI	GATNNNNATC	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	76, 384
BseJI	GATNNNNATC	1 cut(s)	479
BseMII	CTCAG	2 cut(s)	121, 201
BseXI	GCAGC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	251
BsiWI	CGTACG	1 cut(s)	460
BslFI	GGGAC	2 cut(s)	61, 578
BsmFI	GGGAC	2 cut(s)	61, 578
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	120, 202
BspLI	GGNNCC	2 cut(s)	142, 253
BspPI	GGATC	2 cut(s)	135, 148
BspT107I	GGYRCC	1 cut(s)	251
BssMI	GATC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	6 cut(s)	124, 181, 410, 676, 688, 709
Bst6I	CTCTTC	1 cut(s)	734
BstDEI	CTNAG	3 cut(s)	107, 153, 210
BstF5I	GGATG	2 cut(s)	76, 384
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	76, 384
BtsI	GCAGTG	2 cut(s)	54, 722
BtsIMutI	CAGTG	2 cut(s)	54, 722
CaiI	CAGNNNCTG	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	354, 461
CviAII	CATG	2 cut(s)	97, 650
CviQI	GTAC	2 cut(s)	354, 461
DdeI	CTNAG	3 cut(s)	107, 153, 210
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco57I	CTGAAG	2 cut(s)	718, 720
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	100, 653
FaqI	GGGAC	2 cut(s)	61, 578
FatI	CATG	2 cut(s)	96, 649
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	83, 391
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	2 cut(s)	100, 653
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	3 cut(s)	49, 93, 662
HphI	GGTGA	3 cut(s)	200, 384, 632
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	211, 371, 667
Hpy188III	TCNNGA	3 cut(s)	109, 488, 602
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	2 cut(s)	106, 494
HpyCH4III	ACNGT	6 cut(s)	124, 181, 410, 676, 688, 709
HpyCH4IV	ACGT	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	107, 153, 210
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	100, 653
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	3, 30, 76, 94, 269, 706, 711
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	6 cut(s)	73, 118, 188, 267, 620, 688
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	607, 713, 721, 724
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	5 cut(s)	296, 304, 431, 596, 654
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	131, 342, 412, 521, 564, 586, 632
MseI	TTAA	2 cut(s)	384, 507
MslI	CAYNNNNRTG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	100, 653
NlaIV	GGNNCC	2 cut(s)	142, 253
NmuCI	GTSAC	3 cut(s)	188, 267, 620
PfeI	GAWTC	2 cut(s)	93, 662
Pfl23II	CGTACG	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspLI	CGTACG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	142, 253
PstNI	CAGNNNCTG	1 cut(s)	741
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	2 cut(s)	355, 462
RsaNI	GTAC	2 cut(s)	354, 461
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	384, 507
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	290, 555, 580
SmoI	CTYRAG	3 cut(s)	290, 555, 580
Sse9I	AATT	5 cut(s)	296, 304, 431, 596, 654
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	6 cut(s)	124, 181, 410, 676, 688, 709
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	711
TasI	AATT	5 cut(s)	296, 304, 431, 596, 654
TfiI	GAWTC	2 cut(s)	93, 662
Tru1I	TTAA	2 cut(s)	384, 507
Tru9I	TTAA	2 cut(s)	384, 507
TscAI	CASTG	2 cut(s)	61, 722
TseFI	GTSAC	3 cut(s)	188, 267, 620
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	3 cut(s)	188, 267, 620
TspDTI	ATGAA	5 cut(s)	26, 85, 444, 666, 675
TspRI	CASTG	2 cut(s)	61, 722
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	4 cut(s)	296, 431, 596, 654
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.