Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

18917272 .. 18919198

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCTAACAATGAGGAGCATCCTCCTCGAGGGAATGAATGGGAAGTCGTCTCGCTCACTTCATCAGCTTATGCTGCTGCTCCTGGTCCGTATAACGTTGAATCAAGAGATGTGCGCAAGTATGATGCTTACTATGGAGCGGAAACTTCACGTGATCTGTACATGTCTGAACACTTTGTATTCCCACCTAGTGAGCATGAGAATTTACCCATTGATGAATCTTTATTCGTGGCGGAGCAAAGAAAGGATGGCCGAGACTTGATGCTGGAAGGTCAGGGATTGTCTGATCAGTTTCATTATGAAGCTGGAAACAACCAACAGAGTATCTATGGTGAATCTGCGCTTGGTTCTTCTAGACACATGGAATCATTCGGAAGCGAATCAGCCGTGTATGAACACGGATTAGTTGATGCAGAGGGAAACTTAGATCTCCATTCTGATGGTGAGGGTGAAAAGGATGTAAAAAAATCAACACACAACCTTCCTTGTGAAGCTTGGTGGAAAAGGAGAGCTATTTCTATGTATTCACGCACAAGAGAAGCAAATGCGATATGGTCCTTATTCTTTGCAGCTGCGGTCACAGGACTCGTAGTTCTTGGTCAACGCTGGCAACAAGAGAGGTGGCAGGTTTTGCAACTCAAGTGGCAATCAAGCATCAGTAGCGAGAAACTGGGCAGAGTACTTGAACCTCTCTCGCGCTTGAAAGACGTGATTGTGAGAAGTAACCCACAAGCTTCTCTCGTAAGGAGTGGCTCCTCCAGTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.84

Weight (kDa)

5.17

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	27
Acc16I	TGCGCA	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	697
AciI	CCGC	3 cut(s)	140, 233, 575
AclI	AACGTT	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	202
AcvI	CACGTG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	161, 681
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	101, 686, 703
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	68, 305, 494, 512, 572, 734
AluI	AGCT	6 cut(s)	68, 305, 494, 512, 572, 734
Alw26I	GTCTC	2 cut(s)	55, 249
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	74, 77, 569, 572
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	3 cut(s)	117, 343, 699
AspS9I	GGNCC	2 cut(s)	86, 555
AsuHPI	GGTGA	3 cut(s)	344, 455, 461
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	2 cut(s)	86, 555
BbrPI	CACGTG	1 cut(s)	152
BbvI	GCAGC	4 cut(s)	61, 64, 559, 581
BccI	CCATC	2 cut(s)	242, 434
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	55, 249
BfaI	CTAG	3 cut(s)	189, 354, 769
BfuAI	ACCTGC	1 cut(s)	616
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	4 cut(s)	75, 78, 570, 573
BlsI	GCNGC	4 cut(s)	76, 79, 571, 574
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	86, 555
BmeT110I	CYCGRG	1 cut(s)	27
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	86, 555
BmiI	GGNNCC	1 cut(s)	754
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	680
BmsI	GCATC	5 cut(s)	28, 115, 252, 400, 663
BmuI	ACTGGG	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	675, 759
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	19, 253, 463
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	675, 759
BseRI	GAGGAG	3 cut(s)	15, 29, 745
BseXI	GCAGC	4 cut(s)	61, 64, 559, 581
Bsh1236I	CGCG	1 cut(s)	697
BshFI	GGCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	55, 249
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	154, 286, 427
BspACI	CCGC	3 cut(s)	140, 233, 575
BspANI	GGCC	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	616
BsrBI	CCGCTC	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	675, 759
BssMI	GATC	3 cut(s)	154, 286, 427
Bst2UI	CCWGG	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	19, 253, 463
BstFNI	CGCG	1 cut(s)	697
BstHHI	GCGC	3 cut(s)	117, 343, 699
BstKTI	GATC	3 cut(s)	157, 289, 430
BstMAI	GTCTC	2 cut(s)	55, 249
BstMBI	GATC	3 cut(s)	154, 286, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 631, 660
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	4 cut(s)	61, 64, 559, 581
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	19, 253, 463
BtsIMutI	CAGTG	1 cut(s)	766
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	608
CfoI	GCGC	3 cut(s)	117, 343, 699
Cfr13I	GGNCC	2 cut(s)	86, 555
Csp6I	GTAC	2 cut(s)	160, 680
CspCI	CAANNNNNGTGG	4 cut(s)	602, 623, 637, 658
CviAII	CATG	3 cut(s)	163, 197, 361
CviQI	GTAC	2 cut(s)	160, 680
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	3 cut(s)	156, 288, 429
DpnII	GATC	3 cut(s)	154, 286, 427
DraIII	CACNNNGTG	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	86, 555
Eco72I	CACGTG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	166, 200, 364
FatI	CATG	3 cut(s)	162, 196, 360
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	75, 78, 570, 573
FokI	GGATG	3 cut(s)	6, 260, 470
Fsp4HI	GCNGC	4 cut(s)	75, 78, 570, 573
FspBI	CTAG	3 cut(s)	189, 354, 769
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	3 cut(s)	116, 342, 698
GluI	GCNGC	4 cut(s)	75, 78, 570, 573
GsuI	CTGGAG	1 cut(s)	742
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	3 cut(s)	117, 343, 699
Hin1II	CATG	3 cut(s)	166, 200, 364
Hin6I	GCGC	3 cut(s)	115, 341, 697
HinP1I	GCGC	3 cut(s)	115, 341, 697
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HindIII	AAGCTT	2 cut(s)	492, 732
HinfI	GANTC	6 cut(s)	101, 218, 335, 365, 380, 585
HphI	GGTGA	3 cut(s)	344, 455, 461
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	4 cut(s)	169, 286, 374, 439
Hpy188III	TCNNGA	2 cut(s)	105, 354
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	2 cut(s)	263, 491
HpyCH4IV	ACGT	3 cut(s)	96, 151, 708
HpyCH4V	TGCA	3 cut(s)	413, 569, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 631, 660
HpyF3I	CTNAG	1 cut(s)	424
HpySE526I	ACGT	3 cut(s)	96, 151, 708
Hsp92II	CATG	3 cut(s)	166, 200, 364
HspAI	GCGC	3 cut(s)	115, 341, 697
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	154, 286, 427
LmnI	GCTCC	5 cut(s)	16, 85, 137, 235, 758
LpnPI	CCDG	9 cut(s)	69, 96, 251, 260, 291, 567, 592, 611, 656
Lsp1109I	GCAGC	4 cut(s)	61, 64, 559, 581
LweI	GCATC	5 cut(s)	28, 115, 252, 400, 663
MaeI	CTAG	3 cut(s)	189, 354, 769
MaeII	ACGT	3 cut(s)	96, 151, 708
MaeIII	GTNAC	2 cut(s)	577, 722
MalI	GATC	3 cut(s)	156, 288, 429
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	154, 286, 427
MboII	GAAGA	1 cut(s)	342
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	74, 631, 660
NdeII	GATC	3 cut(s)	154, 286, 427
NlaIII	CATG	3 cut(s)	166, 200, 364
NlaIV	GGNNCC	1 cut(s)	754
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	577
NsbI	TGCGCA	1 cut(s)	116
NspI	RCATGY	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	27
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	5 cut(s)	101, 218, 335, 365, 380
PkrI	GCNGC	4 cut(s)	76, 79, 571, 574
PleI	GAGTC	1 cut(s)	579
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	579
Ppu21I	YACGTR	1 cut(s)	152
PscI	ACATGT	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	82
PspCI	CACGTG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	2 cut(s)	86, 555
PspXI	VCTCGAGB	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	161, 681
RsaNI	GTAC	2 cut(s)	160, 680
RseI	CAYNNNNRTG	1 cut(s)	438
SatI	GCNGC	4 cut(s)	75, 78, 570, 573
Sau3AI	GATC	3 cut(s)	154, 286, 427
Sau96I	GGNCC	2 cut(s)	86, 555
ScaI	AGTACT	1 cut(s)	681
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	5 cut(s)	28, 115, 252, 400, 663
Sfr274I	CTCGAG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	86, 555
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	27, 638
SmoI	CTYRAG	2 cut(s)	27, 638
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	140, 233, 575
SspMI	CTAG	3 cut(s)	189, 354, 769
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	3 cut(s)	99, 154, 711
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	202
TatI	WGTACW	2 cut(s)	159, 679
TfiI	GAWTC	5 cut(s)	101, 218, 335, 365, 380
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	4 cut(s)	74, 77, 569, 572
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	6 cut(s)	51, 51, 231, 284, 315, 408
TspGWI	ACGGA	2 cut(s)	78, 414
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	2 cut(s)	86, 555
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	353
XceI	RCATGY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	3 cut(s)	189, 354, 769
ZrmI	AGTACT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.