Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

18878908 .. 18881373

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTTTCTTCGCTGTTCGAAGAAACAGTAAGTCCTTCAAGATGGCAGATAATGAGGAGGGAGAGGAGAGTAATGGTCGTGGGAATGGATGGGAAGTTGTATCACTTACAGCATCAGCATATGCTGCTGCTCCCGGTCCAAGAGAAGTGGAATTGAGCAGTGATGATAAGAGCGGAACGTATGGAGAGCAAGCTGAAACATCTCGTGCTTTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAATCAGCATGAGAATTTACCTGTGGAGCCTGACAGCAGTGAAGTTGATGATGGAAAGGTGCAGAAGGACGCAGTAGATGAGATAAGCACTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTCCAGATGAGTTTGCAGGAATACAGTTCTTAAATGAGAAGGATAACAGGCTACCCATTGGCGGTACAGAATTTGGAGAAGGCACGGCCTTAGAAGGATTAAATTTCGATGACAAAGAGCAGGCTGTATATGGTGCTGCGAAATTTGGTTTTGATGGTGAAACAGTTCTTCATGGTTCATCCACATATGGTGAGAACACAGATATTCCTGGACTTACAGAACCTTCAGAGCAAGATTTAGATTTTTCTGGGGACATCTCTCAATCCCCAAGGTCAATGAAAGATGATAAATTTGATGTTTCGGACCTCCCCTGTGGAGCTTGGTGGAAAAGAAGAGCTTCCTCCTTGTATTCTCATGCAAAGGAAGCAAATGCATATTGGTCTATTTTCGTAGCAGCAGCTGTGATGGGCCTTGTGATACTTGGGCAGCGATGGCAGAACGAACGGTGGCTGGCTCTACAACAGAAGTGGCAATTCAGCGTTGATCAGAAAGGAGGAAGGGTTTTAGGTCCAATATCTCGACTTAAAGATGTAATAGTTGGTGGCCAGCGCCGTGGATCCTTTATTGGAGGCAGCGCCTCAAGTGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

35.85

Weight (kDa)

4.64

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	2 cut(s)	174, 456
AclWI	GGATC	2 cut(s)	945, 958
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	6 cut(s)	256, 370, 464, 496, 536, 683
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	384, 455
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	4 cut(s)	194, 713, 731, 794
AluI	AGCT	4 cut(s)	194, 713, 731, 794
AlwI	GGATC	2 cut(s)	945, 958
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	480, 802, 937
ApeKI	GCWGC	7 cut(s)	125, 128, 530, 788, 791, 820, 966
ApoI	RAATTY	6 cut(s)	256, 370, 464, 496, 536, 683
Asp700I	GAANNNNTTC	2 cut(s)	558, 730
AspLEI	GCGC	2 cut(s)	945, 971
AspS9I	GGNCC	4 cut(s)	137, 697, 802, 902
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	563, 596
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	3 cut(s)	137, 697, 902
BalI	TGGCCA	1 cut(s)	939
BamHI	GGATCC	1 cut(s)	950
BauI	CACGAG	1 cut(s)	204
BbvI	GCAGC	7 cut(s)	112, 115, 517, 800, 803, 832, 978
BccI	CCATC	6 cut(s)	37, 84, 287, 542, 793, 819
BceAI	ACGGC	2 cut(s)	495, 930
BciT130I	CCWGG	1 cut(s)	603
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	946, 972
BisI	GCNGC	7 cut(s)	126, 129, 531, 789, 792, 821, 967
BlsI	GCNGC	7 cut(s)	127, 130, 532, 790, 793, 822, 968
Bme1390I	CCNGG	2 cut(s)	135, 603
Bme18I	GGWCC	3 cut(s)	137, 697, 902
BmgT120I	GGNCC	4 cut(s)	137, 697, 802, 902
BmiI	GGNNCC	2 cut(s)	270, 952
BmrFI	CCNGG	2 cut(s)	135, 603
BmsI	GCATC	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	958
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	662, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 455
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	662, 946
BseGI	GGATG	3 cut(s)	95, 397, 572
BseLI	CCNNNNNNNGG	2 cut(s)	384, 455
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	71, 80
BseXI	GCAGC	7 cut(s)	112, 115, 517, 800, 803, 832, 978
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	482, 804, 939
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	384, 455
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	482, 804, 939
Bsp119I	TTCGAA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	877, 950
BspACI	CCGC	2 cut(s)	174, 456
BspANI	GGCC	3 cut(s)	482, 804, 939
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	270, 952
BspPI	GGATC	2 cut(s)	945, 958
BspQI	GCTCTTC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	662, 946
BssMI	GATC	2 cut(s)	877, 950
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	662
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	29, 420, 559, 840
Bst6I	CTCTTC	1 cut(s)	721
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	192, 516, 846, 941
BstDEI	CTNAG	2 cut(s)	333, 484
BstDSI	CCRYGG	1 cut(s)	946
BstF5I	GGATG	3 cut(s)	95, 397, 572
BstH2I	RGCGCY	2 cut(s)	946, 972
BstHHI	GCGC	2 cut(s)	945, 971
BstKTI	GATC	2 cut(s)	880, 953
BstMBI	GATC	2 cut(s)	877, 950
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 758, 826
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	133, 601
BstV1I	GCAGC	7 cut(s)	112, 115, 517, 800, 803, 832, 978
BstX2I	RGATCY	1 cut(s)	950
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	950
BsuRI	GGCC	3 cut(s)	482, 804, 939
BtgI	CCRYGG	1 cut(s)	946
BtgZI	GCGATG	1 cut(s)	838
BtsCI	GGATG	3 cut(s)	95, 397, 572
BtsI	GCAGTG	2 cut(s)	166, 286
BtsIMutI	CAGTG	3 cut(s)	166, 286, 330
Cac8I	GCNNGC	4 cut(s)	192, 516, 846, 941
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	945, 971
Cfr13I	GGNCC	4 cut(s)	137, 697, 802, 902
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	459
CspCI	CAANNNNNGTGG	4 cut(s)	129, 164, 842, 877
CviAII	CATG	4 cut(s)	217, 251, 566, 749
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	333, 484
DpnI	GATC	2 cut(s)	879, 952
DpnII	GATC	2 cut(s)	877, 950
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	662
Eco47I	GGWCC	3 cut(s)	137, 697, 902
Eco57I	CTGAAG	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	4 cut(s)	220, 254, 569, 752
FalI	AAGNNNNNCTT	2 cut(s)	715, 747
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	4 cut(s)	216, 250, 565, 748
FauNDI	CATATG	2 cut(s)	121, 580
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	7 cut(s)	126, 129, 531, 789, 792, 821, 967
FokI	GGATG	3 cut(s)	102, 404, 559
Fsp4HI	GCNGC	7 cut(s)	126, 129, 531, 789, 792, 821, 967
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	2 cut(s)	944, 970
GluI	GCNGC	7 cut(s)	126, 129, 531, 789, 792, 821, 967
HaeII	RGCGCY	2 cut(s)	946, 972
HaeIII	GGCC	3 cut(s)	482, 804, 939
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	2 cut(s)	945, 971
Hin1II	CATG	4 cut(s)	220, 254, 569, 752
Hin6I	GCGC	2 cut(s)	943, 969
HinP1I	GCGC	2 cut(s)	943, 969
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	563, 596
Hpy166II	GTNNAC	1 cut(s)	980
Hpy188I	TCNGA	3 cut(s)	622, 697, 882
Hpy188III	TCNNGA	3 cut(s)	40, 398, 912
Hpy8I	GTNNAC	1 cut(s)	980
HpyAV	CCTTC	8 cut(s)	46, 301, 332, 427, 467, 482, 627, 885
HpyCH4III	ACNGT	4 cut(s)	29, 420, 559, 840
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	304, 410, 752, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 758, 826
HpyF3I	CTNAG	2 cut(s)	333, 484
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	220, 254, 569, 752
HspAI	GCGC	2 cut(s)	943, 969
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	2 cut(s)	877, 950
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	3 cut(s)	136, 268, 710
Lsp1109I	GCAGC	7 cut(s)	112, 115, 517, 800, 803, 832, 978
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	2 cut(s)	879, 952
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	877, 950
MboII	GAAGA	4 cut(s)	33, 377, 554, 738
MflI	RGATCY	1 cut(s)	950
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	8 cut(s)	152, 256, 370, 464, 496, 536, 683, 866
MluNI	TGGCCA	1 cut(s)	939
MmeI	TCCRAC	1 cut(s)	369
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	2 cut(s)	558, 730
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	5 cut(s)	380, 425, 494, 918, 985
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 603
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	125, 758, 826
NciI	CCSGG	1 cut(s)	135
NdeI	CATATG	2 cut(s)	121, 580
NdeII	GATC	2 cut(s)	877, 950
NlaIII	CATG	4 cut(s)	220, 254, 569, 752
NlaIV	GGNNCC	2 cut(s)	270, 952
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	721
PdmI	GAANNNNTTC	2 cut(s)	558, 730
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	7 cut(s)	127, 130, 532, 790, 793, 822, 968
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	270, 952
PspPI	GGNCC	4 cut(s)	137, 697, 802, 902
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	5 cut(s)	380, 425, 494, 918, 985
SatI	GCNGC	7 cut(s)	126, 129, 531, 789, 792, 821, 967
Sau3AI	GATC	2 cut(s)	877, 950
Sau96I	GGNCC	4 cut(s)	137, 697, 802, 902
ScrFI	CCNGG	2 cut(s)	135, 603
SfaNI	GCATC	1 cut(s)	122
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	3 cut(s)	137, 697, 902
SmlI	CTYRAG	1 cut(s)	973
SmoI	CTYRAG	1 cut(s)	973
Sse9I	AATT	8 cut(s)	152, 256, 370, 464, 496, 536, 683, 866
SsiI	CCGC	2 cut(s)	174, 456
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	133, 601
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	4 cut(s)	29, 420, 559, 840
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	19, 501, 913
TasI	AATT	8 cut(s)	152, 256, 370, 464, 496, 536, 683, 866
Tru1I	TTAA	5 cut(s)	380, 425, 494, 918, 985
Tru9I	TTAA	5 cut(s)	380, 425, 494, 918, 985
TscAI	CASTG	3 cut(s)	166, 286, 337
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	7 cut(s)	125, 128, 530, 788, 791, 820, 966
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	4 cut(s)	205, 554, 561, 686
TspRI	CASTG	3 cut(s)	166, 286, 337
VpaK11BI	GGWCC	3 cut(s)	137, 697, 902
XapI	RAATTY	6 cut(s)	256, 370, 464, 496, 536, 683
XmnI	GAANNNNTTC	2 cut(s)	558, 730
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.