Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

47219456 .. 47224209

Gene Structure 4754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAGATAATGAGGAGGGAGAGGAGAGTAATGGTCGTGGGAATGGATGGGAAGTTGTATCACTTACAGCGTCGGCATACGCTGCTGCTCCCGGTCCGAGAGAAGTGGAATTGAGCAGTGATGATAAGAGTGGAACTTATGGAGAGCAAGCTGAAACATCTCGTGCTTTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAATCAGCATGAGAATTTACCTGTGGAGCCTGACAGCAGTGAAGTTGATGATGAAAAGGTGCAGAAGGATGCAGTAGATGAGATAAGCACTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTTCAGATGAGTTTGCAGGAATACAGTTCTTAAATGAGAAGGATAACAGGCTACCCATTGGCGGTACAGAATTTGGAGAAGGCACAGCCTTAGAAGGATTAAATTTCAATGACAAAGAACAGGCTGTATATGGTGCTGCGAAATTTGGTTTTGATGGTGAAACAGTTCTTCATGGTTCATCCGCATATGGTGAGAACACAGATATTCCTGGACTTACAGAACCTTCAGAGCAAGATTTAGATTTTTCTGGGGACATCTCTCAATCCCCAAGGTCAATGAAAGATGATAAATTTGATGTTTCGGACCTCCCCTGTGGAGCTTGGTGGAAAAGAAGAGCTTCCTCCTTGTATTCTCATGCAAAGGAAGCAAATGCATATTGGTCTATTTTCGTAGCAGCAGCTGTGATGGGCCTTGTGATACTTGGGCAGCGATGGCAGAACGAAAGGTGGCTGGCTCTACAACAGAAGTGGCAATTCAGTGTTGATCAGAAAGGAGGAAGGGTTTTAGGTCCAATATCTCGACTTAAAGATGTAATAGTTGGTGGCCAGCGCCGTGGATCCTTTATTGGAGGCAGCGCCTCAAGTGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.18

Weight (kDa)

4.5

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 534
AclWI	GGATC	2 cut(s)	903, 916
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	6 cut(s)	214, 328, 422, 454, 494, 641
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	342, 413
AgsI	TTSAA	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	4 cut(s)	152, 671, 689, 752
AluI	AGCT	4 cut(s)	152, 671, 689, 752
AlwI	GGATC	2 cut(s)	903, 916
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	760, 895
ApeKI	GCWGC	7 cut(s)	83, 86, 488, 746, 749, 778, 924
ApoI	RAATTY	6 cut(s)	214, 328, 422, 454, 494, 641
Asp700I	GAANNNNTTC	2 cut(s)	516, 688
AspLEI	GCGC	2 cut(s)	903, 929
AspS9I	GGNCC	4 cut(s)	95, 655, 760, 860
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	521, 554
AvaII	GGWCC	3 cut(s)	95, 655, 860
BalI	TGGCCA	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	908
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	7 cut(s)	70, 73, 475, 758, 761, 790, 936
BccI	CCATC	4 cut(s)	42, 500, 751, 777
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	1 cut(s)	561
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	2 cut(s)	904, 930
BisI	GCNGC	7 cut(s)	84, 87, 489, 747, 750, 779, 925
BlsI	GCNGC	7 cut(s)	85, 88, 490, 748, 751, 780, 926
Bme1390I	CCNGG	2 cut(s)	93, 561
Bme18I	GGWCC	3 cut(s)	95, 655, 860
BmgT120I	GGNCC	4 cut(s)	95, 655, 760, 860
BmiI	GGNNCC	2 cut(s)	228, 910
BmrFI	CCNGG	2 cut(s)	93, 561
BmsI	GCATC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	620, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 413
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	620, 904
BseGI	GGATG	4 cut(s)	53, 274, 355, 530
BseLI	CCNNNNNNNGG	2 cut(s)	342, 413
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	29, 38
BseXI	GCAGC	7 cut(s)	70, 73, 475, 758, 761, 790, 936
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	762, 897
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	342, 413
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	762, 897
Bsp143I	GATC	2 cut(s)	835, 908
BspACI	CCGC	2 cut(s)	414, 534
BspANI	GGCC	2 cut(s)	762, 897
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	228, 910
BspPI	GGATC	2 cut(s)	903, 916
BspQI	GCTCTTC	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	620, 904
BssMI	GATC	2 cut(s)	835, 908
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	378, 517
Bst6I	CTCTTC	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	150, 804, 899
BstDEI	CTNAG	2 cut(s)	291, 442
BstDSI	CCRYGG	1 cut(s)	904
BstF5I	GGATG	4 cut(s)	53, 274, 355, 530
BstH2I	RGCGCY	2 cut(s)	904, 930
BstHHI	GCGC	2 cut(s)	903, 929
BstKTI	GATC	2 cut(s)	838, 911
BstMBI	GATC	2 cut(s)	835, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	2 cut(s)	91, 559
BstV1I	GCAGC	7 cut(s)	70, 73, 475, 758, 761, 790, 936
BstX2I	RGATCY	1 cut(s)	908
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	908
BsuRI	GGCC	2 cut(s)	762, 897
BtgI	CCRYGG	1 cut(s)	904
BtgZI	GCGATG	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	53, 274, 355, 530
BtsI	GCAGTG	2 cut(s)	124, 244
BtsIMutI	CAGTG	4 cut(s)	124, 244, 288, 835
Cac8I	GCNNGC	3 cut(s)	150, 804, 899
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	2 cut(s)	903, 929
Cfr13I	GGNCC	4 cut(s)	95, 655, 760, 860
CpoI	CGGWCCG	1 cut(s)	95
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	800, 835
CspI	CGGWCCG	1 cut(s)	95
CviAII	CATG	4 cut(s)	175, 209, 524, 707
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	291, 442
DpnI	GATC	2 cut(s)	837, 910
DpnII	GATC	2 cut(s)	835, 908
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	95, 655, 860
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	4 cut(s)	178, 212, 527, 710
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	4 cut(s)	174, 208, 523, 706
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	7 cut(s)	84, 87, 489, 747, 750, 779, 925
FokI	GGATG	4 cut(s)	60, 281, 362, 517
Fsp4HI	GCNGC	7 cut(s)	84, 87, 489, 747, 750, 779, 925
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	902, 928
GluI	GCNGC	7 cut(s)	84, 87, 489, 747, 750, 779, 925
HaeII	RGCGCY	2 cut(s)	904, 930
HaeIII	GGCC	2 cut(s)	762, 897
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	903, 929
Hin1II	CATG	4 cut(s)	178, 212, 527, 710
Hin6I	GCGC	2 cut(s)	901, 927
HinP1I	GCGC	2 cut(s)	901, 927
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	521, 554
Hpy166II	GTNNAC	1 cut(s)	938
Hpy188I	TCNGA	5 cut(s)	99, 358, 580, 655, 840
Hpy188III	TCNNGA	1 cut(s)	870
Hpy8I	GTNNAC	1 cut(s)	938
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	7 cut(s)	259, 290, 385, 425, 440, 585, 843
HpyCH4III	ACNGT	2 cut(s)	378, 517
HpyCH4V	TGCA	5 cut(s)	262, 272, 368, 710, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
HpyF3I	CTNAG	2 cut(s)	291, 442
Hsp92II	CATG	4 cut(s)	178, 212, 527, 710
HspAI	GCGC	2 cut(s)	901, 927
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	835, 908
LguI	GCTCTTC	1 cut(s)	679
LmnI	GCTCC	3 cut(s)	94, 226, 668
Lsp1109I	GCAGC	7 cut(s)	70, 73, 475, 758, 761, 790, 936
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	837, 910
MboI	GATC	2 cut(s)	835, 908
MboII	GAAGA	3 cut(s)	335, 512, 696
MflI	RGATCY	1 cut(s)	908
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	8 cut(s)	110, 214, 328, 422, 454, 494, 641, 824
MluNI	TGGCCA	1 cut(s)	897
MmeI	TCCRAC	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	897
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	516, 688
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	5 cut(s)	338, 383, 452, 876, 943
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	93, 561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	835, 908
NlaIII	CATG	4 cut(s)	178, 212, 527, 710
NlaIV	GGNNCC	2 cut(s)	228, 910
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	679
PdmI	GAANNNNTTC	2 cut(s)	516, 688
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	7 cut(s)	85, 88, 490, 748, 751, 780, 926
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	228, 910
PspPI	GGNCC	4 cut(s)	95, 655, 760, 860
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
Rsr2I	CGGWCCG	1 cut(s)	95
RsrII	CGGWCCG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	5 cut(s)	338, 383, 452, 876, 943
SatI	GCNGC	7 cut(s)	84, 87, 489, 747, 750, 779, 925
Sau3AI	GATC	2 cut(s)	835, 908
Sau96I	GGNCC	4 cut(s)	95, 655, 760, 860
ScrFI	CCNGG	2 cut(s)	93, 561
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	3 cut(s)	95, 655, 860
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	8 cut(s)	110, 214, 328, 422, 454, 494, 641, 824
SsiI	CCGC	2 cut(s)	414, 534
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	91, 559
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	2 cut(s)	378, 517
TaqI	TCGA	1 cut(s)	871
TasI	AATT	8 cut(s)	110, 214, 328, 422, 454, 494, 641, 824
Tru1I	TTAA	5 cut(s)	338, 383, 452, 876, 943
Tru9I	TTAA	5 cut(s)	338, 383, 452, 876, 943
TscAI	CASTG	4 cut(s)	124, 244, 295, 835
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	7 cut(s)	83, 86, 488, 746, 749, 778, 924
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	163, 267, 512, 519, 644
TspRI	CASTG	4 cut(s)	124, 244, 295, 835
VpaK11BI	GGWCC	3 cut(s)	95, 655, 860
XapI	RAATTY	6 cut(s)	214, 328, 422, 454, 494, 641
XmnI	GAANNNNTTC	2 cut(s)	516, 688
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.