Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

35689291 .. 35690366

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGGTTGGTTTCAGTACGTAGACCACTTGTTTTTCACGTTTTACTTGTAGCAATCCCTTTTTCCCTCTTGGTTTGCTTCTACATATCTCTGTCAGTTTCTAAGCACCATAGTTTTCTTGTCTCCACTTACGAGTTTATGGTAGTGGCAAAATCAAATCGCAAGTTCGTGTTCTTCATGTTCGCTGTTGTTTGTATCACGATCAATATCGTGTTTGGGATTTTGTGGCCTTCCAGGGAAGATGCTGATCATTATGTTCCGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTACTATTACTACTACAAATGTAGCGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATTCTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATGTTGTATACGAGAAGCTCACGTGCATGGCCTCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.5

Weight (kDa)

4.48

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	22, 519
AciI	CCGC	2 cut(s)	260, 360
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	471
AcvI	CACGTG	1 cut(s)	534
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	470, 529
AluI	AGCT	2 cut(s)	470, 529
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	2 cut(s)	227, 540
ApoI	RAATTY	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	2 cut(s)	362, 389
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	263, 546
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	471
BsaAI	YACGTR	2 cut(s)	20, 534
BsaBI	GATNNNNATC	2 cut(s)	206, 246
BsaJI	CCNNGG	1 cut(s)	234
Bse8I	GATNNNNATC	2 cut(s)	206, 246
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	2 cut(s)	206, 246
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	229, 542
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	229, 542
Bsp143I	GATC	2 cut(s)	201, 247
BspACI	CCGC	2 cut(s)	260, 360
BspANI	GGCC	2 cut(s)	229, 542
BspCNI	CTCAG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	201, 247
BssNAI	GTATAC	1 cut(s)	520
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	417, 432, 447
BstBAI	YACGTR	2 cut(s)	20, 534
BstDEI	CTNAG	2 cut(s)	102, 471
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	2 cut(s)	204, 250
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	201, 247
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	229, 542
BtgZI	GCGATG	2 cut(s)	354, 417
BtsCI	GGATG	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	178, 538
CviJI	RGCY	5 cut(s)	229, 470, 485, 529, 542
CviKI_1	RGCY	5 cut(s)	229, 470, 485, 529, 542
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	102, 471
DpnI	GATC	2 cut(s)	203, 249
DpnII	GATC	2 cut(s)	201, 247
Eam1104I	CTCTTC	3 cut(s)	417, 432, 447
EarI	CTCTTC	3 cut(s)	417, 432, 447
Eco105I	TACGTA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	471
Eco72I	CACGTG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	233
FaeI	CATG	2 cut(s)	181, 541
FatI	CATG	2 cut(s)	177, 537
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	2 cut(s)	22, 519
FokI	GGATG	1 cut(s)	524
FspBI	CTAG	2 cut(s)	263, 546
HaeIII	GGCC	2 cut(s)	229, 542
Hin1II	CATG	2 cut(s)	181, 541
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	23, 520
Hpy188I	TCNGA	2 cut(s)	367, 451
Hpy188III	TCNNGA	2 cut(s)	199, 546
Hpy8I	GTNNAC	2 cut(s)	23, 520
HpyAV	CCTTC	2 cut(s)	240, 286
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	19, 39, 533
HpyCH4V	TGCA	1 cut(s)	537
HpyF3I	CTNAG	2 cut(s)	102, 471
HpySE526I	ACGT	3 cut(s)	19, 39, 533
Hsp92II	CATG	2 cut(s)	181, 541
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	201, 247
LpnPI	CCDG	2 cut(s)	220, 247
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	263, 546
MaeII	ACGT	3 cut(s)	19, 39, 533
MalI	GATC	2 cut(s)	203, 249
MboI	GATC	2 cut(s)	201, 247
MboII	GAAGA	7 cut(s)	166, 251, 317, 392, 434, 449, 464
MluCI	AATT	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	5 cut(s)	77, 337, 456, 466, 502
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
NdeII	GATC	2 cut(s)	201, 247
NlaIII	CATG	2 cut(s)	181, 541
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	446
PmaCI	CACGTG	1 cut(s)	534
PmlI	CACGTG	1 cut(s)	534
Ppu21I	YACGTR	2 cut(s)	20, 534
Psp6I	CCWGG	1 cut(s)	233
PspCI	CACGTG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	2 cut(s)	201, 247
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	7 cut(s)	8, 22, 42, 297, 472, 531, 536
SfaNI	GCATC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	536
SnaBI	TACGTA	1 cut(s)	20
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	260, 360
SspMI	CTAG	2 cut(s)	263, 546
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	3 cut(s)	22, 42, 536
TasI	AATT	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TspDTI	ATGAA	5 cut(s)	166, 282, 318, 393, 469
XapI	RAATTY	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	22, 519
XspI	CTAG	2 cut(s)	263, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.