Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

10340440 .. 10342050

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCAGATAATGAGGAGAGAGAGGAAAGCACTGTGCGCGGTAAGATGGCAGATAACGAGGAGGGGGAGGAAAGTACTACTCGTGGGAATGGATGGGAAGTCGTACAACTTACAGCATCTACGTATGCTGCTGCTCCTGGTCCAGGAGGAATTGAATTGAGCAATGAGGATCAGAGTGATACCTATGGTGAGCATGCTGAATCTTCTCGTGCTCTTTTCATGTCTGGTCACTTTGCTTTTCCACCCAGTCAGCATGAGAATTTGCCGTTGGAGTCTGATAGAAGTGAAATTCATAATGAACATTTGGACAGTGATGTCTTAGCTGAGATAGGTCGTGAAGAAGGAGGTAGGTCAAGTGGAAAGGAGGAAGAAACTTTGACTTTGGAAGGGTTGGATGTGCCAGATGAGTTTGCAGGAAAACAGTCTGTATATGATAAGGGTAACTTGCAATTGATTGGTGATACAGAGTTTGAAGAAGGTTTAATTTCGGCTCACAAAGATCAGATTATAATTGATGCTGCTACATATCATTTTGACGGTGAAACAGATCTTGGTGGCTTATCTCATTTTGGTGAGAGCCCCACTATTCCTGGACTCGAGGAACCATCAGAACAAGGTTTAGGTTTCTCTGAGGACATCATGCAATCCCCAAGGTCTGAGAAAGATGATAAACTTGATGTTTCTCGCCTGCCCTGTGGAGCTTGGTGGAAAAGAAGAGCTGCTTCCTTGTATTCTCATGCAAAAGAAGCAAATGCAGTTTGGTCTATTTTCGTAGCAGCAGCTGTGATGGGGCTTGTGTTACTTGGGCAGCGGTGGCAAAATGAAAGGTGGCTGGCTCTACAGCAAAAATGGCTGTTGAGCGTCAACGATCAGAAAACAGGAAGGATGATTGGTCCCATATCCCGTCTTAAAGGCGTTATAGTGAGCAGCCACCGCCGAGGATCCTTTATTGGGAGCAGCTCCTCAAGCGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

35.61

Weight (kDa)

4.63

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AasI	GACNNNNNNGTC	1 cut(s)	314
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	39, 811, 934
AclWI	GGATC	3 cut(s)	177, 936, 949
AcsI	RAATTY	2 cut(s)	259, 288
AfaI	GTAC	2 cut(s)	76, 105
AfiI	CCNNNNNNNGG	2 cut(s)	143, 951
AgsI	TTSAA	2 cut(s)	155, 473
AjnI	CCWGG	3 cut(s)	136, 142, 589
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 534, 566
AluBI	AGCT	5 cut(s)	323, 701, 719, 782, 960
AluI	AGCT	5 cut(s)	323, 701, 719, 782, 960
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	177, 936, 949
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	596
ApeKI	GCWGC	9 cut(s)	128, 131, 518, 719, 776, 779, 808, 927, 957
ApoI	RAATTY	2 cut(s)	259, 288
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	140, 893
AsuHPI	GGTGA	4 cut(s)	200, 470, 551, 584
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	140, 893
BamHI	GGATCC	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	581
BauI	CACGAG	2 cut(s)	81, 207
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	9 cut(s)	115, 118, 505, 706, 788, 791, 820, 939, 969
BccI	CCATC	4 cut(s)	40, 87, 613, 781
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	3 cut(s)	138, 144, 591
BfmI	CTRYAG	1 cut(s)	839
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	9 cut(s)	129, 132, 519, 720, 777, 780, 809, 928, 958
BlsI	GCNGC	9 cut(s)	130, 133, 520, 721, 778, 781, 810, 929, 959
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	138, 144, 591
Bme18I	GGWCC	2 cut(s)	140, 893
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	140, 893
BmiI	GGNNCC	3 cut(s)	603, 895, 943
BmrFI	CCNGG	3 cut(s)	138, 144, 591
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	125, 505
BmuI	ACTGGG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	949
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	650, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 951
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	138, 144, 591
BseDI	CCNNGG	2 cut(s)	650, 937
BseGI	GGATG	3 cut(s)	98, 400, 891
BseLI	CCNNNNNNNGG	2 cut(s)	143, 951
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	315, 621, 648
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	3 cut(s)	29, 74, 952
BseXI	GCAGC	9 cut(s)	115, 118, 505, 706, 788, 791, 820, 939, 969
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	596
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	2 cut(s)	143, 951
BsmFI	GGGAC	1 cut(s)	879
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	214, 581
Bsp143I	GATC	5 cut(s)	169, 499, 547, 868, 941
BspACI	CCGC	3 cut(s)	39, 811, 934
BspCNI	CTCAG	3 cut(s)	316, 622, 649
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	603, 895, 943
BspPI	GGATC	3 cut(s)	177, 936, 949
BspQI	GCTCTTC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	650, 937
BssMI	GATC	5 cut(s)	169, 499, 547, 868, 941
BssSI	CACGAG	2 cut(s)	81, 207
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	2 cut(s)	81, 207
Bst2UI	CCWGG	3 cut(s)	138, 144, 591
Bst4CI	ACNGT	4 cut(s)	34, 311, 423, 539
Bst6I	CTCTTC	1 cut(s)	709
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	195, 689, 834
BstDEI	CTNAG	4 cut(s)	319, 324, 630, 657
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	98, 400, 891
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	172, 502, 550, 871, 944
BstMBI	GATC	5 cut(s)	169, 499, 547, 868, 941
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 746, 814, 850, 933, 966
BstNI	CCWGG	3 cut(s)	138, 144, 591
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	136, 142, 589
BstSFI	CTRYAG	1 cut(s)	839
BstSNI	TACGTA	1 cut(s)	123
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	9 cut(s)	115, 118, 505, 706, 788, 791, 820, 939, 969
BstX2I	RGATCY	2 cut(s)	547, 941
BstYI	RGATCY	2 cut(s)	547, 941
BtsCI	GGATG	3 cut(s)	98, 400, 891
BtsIMutI	CAGTG	2 cut(s)	30, 316
Cac8I	GCNNGC	3 cut(s)	195, 689, 834
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	140, 893
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	75, 104
CviAII	CATG	5 cut(s)	194, 220, 254, 640, 737
CviQI	GTAC	2 cut(s)	75, 104
DdeI	CTNAG	4 cut(s)	319, 324, 630, 657
DpnI	GATC	5 cut(s)	171, 501, 549, 870, 943
DpnII	GATC	5 cut(s)	169, 499, 547, 868, 941
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
Eco105I	TACGTA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	140, 893
Eco88I	CYCGRG	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	136, 142, 589
EcoT14I	CCWWGG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	5 cut(s)	197, 223, 257, 643, 740
FalI	AAGNNNNNCTT	5 cut(s)	428, 460, 706, 738, 958
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	5 cut(s)	193, 219, 253, 639, 736
Fnu4HI	GCNGC	9 cut(s)	129, 132, 519, 720, 777, 780, 809, 928, 958
FokI	GGATG	3 cut(s)	105, 407, 898
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	9 cut(s)	129, 132, 519, 720, 777, 780, 809, 928, 958
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	9 cut(s)	129, 132, 519, 720, 777, 780, 809, 928, 958
HgaI	GACGC	1 cut(s)	850
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	197, 223, 257, 643, 740
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	3 cut(s)	200, 272, 594
HphI	GGTGA	4 cut(s)	200, 470, 551, 584
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	7 cut(s)	174, 277, 504, 610, 631, 658, 873
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	4 cut(s)	335, 380, 470, 876
HpyCH4III	ACNGT	4 cut(s)	34, 311, 423, 539
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	5 cut(s)	413, 448, 643, 740, 755
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 746, 814, 850, 933, 966
HpyF3I	CTNAG	4 cut(s)	319, 324, 630, 657
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	197, 223, 257, 643, 740
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	169, 499, 547, 868, 941
LguI	GCTCTTC	1 cut(s)	709
LmnI	GCTCC	4 cut(s)	139, 698, 954, 965
Lsp1109I	GCAGC	9 cut(s)	115, 118, 505, 706, 788, 791, 820, 939, 969
LweI	GCATC	2 cut(s)	125, 505
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	227, 440, 798
MalI	GATC	5 cut(s)	171, 501, 549, 870, 943
MboI	GATC	5 cut(s)	169, 499, 547, 868, 941
MboII	GAAGA	5 cut(s)	195, 350, 380, 485, 726
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	2 cut(s)	547, 941
MhlI	GDGCHC	2 cut(s)	214, 581
MluCI	AATT	7 cut(s)	150, 155, 259, 288, 449, 483, 510
MlyI	GAGTC	2 cut(s)	281, 588
MmeI	TCCRAC	2 cut(s)	249, 372
MseI	TTAA	3 cut(s)	482, 909, 976
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	782, 811
MspR9I	CCNGG	3 cut(s)	138, 144, 591
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	3 cut(s)	138, 144, 591
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	6 cut(s)	36, 746, 814, 850, 933, 966
NdeII	GATC	5 cut(s)	169, 499, 547, 868, 941
NlaIII	CATG	5 cut(s)	197, 223, 257, 643, 740
NlaIV	GGNNCC	3 cut(s)	603, 895, 943
NmeAIII	GCCGAG	1 cut(s)	962
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	2 cut(s)	142, 589
PkrI	GCNGC	9 cut(s)	130, 133, 520, 721, 778, 781, 810, 929, 959
PleI	GAGTC	2 cut(s)	280, 588
PpsI	GAGTC	2 cut(s)	280, 588
Ppu21I	YACGTR	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	509
Psp6I	CCWGG	3 cut(s)	136, 142, 589
PspGI	CCWGG	3 cut(s)	136, 142, 589
PspN4I	GGNNCC	3 cut(s)	603, 895, 943
PspPI	GGNCC	2 cut(s)	140, 893
PspXI	VCTCGAGB	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	547, 941
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	76, 105
RsaNI	GTAC	2 cut(s)	75, 104
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	482, 909, 976
SatI	GCNGC	9 cut(s)	129, 132, 519, 720, 777, 780, 809, 928, 958
Sau3AI	GATC	5 cut(s)	169, 499, 547, 868, 941
Sau96I	GGNCC	2 cut(s)	140, 893
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	2 cut(s)	281, 588
ScrFI	CCNGG	3 cut(s)	138, 144, 591
SduI	GDGCHC	2 cut(s)	214, 581
SfaNI	GCATC	2 cut(s)	125, 505
SfcI	CTRYAG	1 cut(s)	839
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	2 cut(s)	140, 893
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	596, 964
SmoI	CTYRAG	2 cut(s)	596, 964
SnaBI	TACGTA	1 cut(s)	123
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	7 cut(s)	150, 155, 259, 288, 449, 483, 510
SsiI	CCGC	3 cut(s)	39, 811, 934
StyD4I	CCNGG	3 cut(s)	136, 142, 589
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	4 cut(s)	34, 311, 423, 539
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	597
TasI	AATT	7 cut(s)	150, 155, 259, 288, 449, 483, 510
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	482, 909, 976
Tru9I	TTAA	3 cut(s)	482, 909, 976
TscAI	CASTG	2 cut(s)	37, 316
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	9 cut(s)	128, 131, 518, 719, 776, 779, 808, 927, 957
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	208, 281, 312, 837
TspRI	CASTG	2 cut(s)	37, 316
VpaK11BI	GGWCC	2 cut(s)	140, 893
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	259, 288
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.