Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

12829809 .. 12833299

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAGATAATGAGGAGGGAGAGGAGAGTACTGGTCGTGGGAATGGATGGGAAGTGGTCTCGCTTACAGCATCAGCGTATGCTGCTGCTCCTGGTCCGCAAGAAGTGGAATTGAGCAATGATGATGAGAGTGGTAGAGATGGAGAGCTAGCTGAAACTTCTCGTGCTTTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAATCAGCATGAGAATTTACCTCTGGAGCCTGAAAAAAGTGAAGTTGAGGATGTAAAGGTGCAGAAGGATGCAGTAGATGAGATAAAAATTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTTCAGATGAGTTTGCAGGAATACAGTTTACAAAAGAGAAGGACAACAGGTACCCCATTGGCGGTACAGAGTTTGGAGAAGGCACGGCTTTGGAAGGGCTCCATTTTGATGACAACGAGCAGGCTGTATATGGTGCTGCAAAATTTGGTTTTGATGGTGAAACAGTTCTTCGTGGTTCATCCACATATGGTGACAACACAGATATTCCTGGAATTACAGAACCTTCAGAGCAAGGTTTAGATTTATCTGGGGACACCTGTCAATCTCCAAGGCCAATGAAAGATGATAAATTTGATGGTTCTGACCTCCCATGTGGAGCTTGGTGGAAAAGAAGAGCTTATTCTTTGTATTCACATGCAAAGGAAGCAAATGCATGTTGGTCTATTATTGTAGCAGCAGCTGTGATGGGCCTTGTGATACTTGGGCAACGGTGGCAAAACGAAGGTTGGCAGGCTCTACAACAGAAGTGGCAATCTAGTGTTGATCAGAAAGCAGGAAGGATTTTAGCTCCAATATCTCGACTTAAAGATGTAATAGTTGGTGGCCAGCGCCATGGATCCTTTATTGGAGGCAGTACCTCAAGTGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

34.14

Weight (kDa)

4.52

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	2 cut(s)	98, 414
AclWI	GGATC	2 cut(s)	903, 916
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	4 cut(s)	214, 328, 494, 641
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	4 cut(s)	31, 404, 418, 928
AfiI	CCNNNNNNNGG	2 cut(s)	342, 413
AjnI	CCWGG	2 cut(s)	91, 559
AluBI	AGCT	6 cut(s)	148, 152, 671, 689, 752, 860
AluI	AGCT	6 cut(s)	148, 152, 671, 689, 752, 860
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	903, 916
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	3 cut(s)	623, 760, 895
ApeKI	GCWGC	5 cut(s)	83, 86, 488, 746, 749
ApoI	RAATTY	4 cut(s)	214, 328, 494, 641
Asp700I	GAANNNNTTC	1 cut(s)	516
Asp718I	GGTACC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	95, 760
AsuHPI	GGTGA	2 cut(s)	521, 554
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	70, 73, 475, 758, 761
BccI	CCATC	5 cut(s)	42, 134, 500, 641, 751
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	2 cut(s)	93, 561
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	149, 309, 828
BfoI	RGCGCY	1 cut(s)	904
BisI	GCNGC	5 cut(s)	84, 87, 489, 747, 750
BlsI	GCNGC	5 cut(s)	85, 88, 490, 748, 751
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	93, 561
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 760
BmiI	GGNNCC	4 cut(s)	228, 404, 452, 910
BmrFI	CCNGG	2 cut(s)	93, 561
BmsI	GCATC	2 cut(s)	80, 259
BmtI	GCTAGC	1 cut(s)	152
BoxI	GACNNNNGTC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	916
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	620, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 413
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	93, 561
BseDI	CCNNGG	2 cut(s)	620, 904
BseGI	GGATG	5 cut(s)	53, 256, 274, 355, 530
BseLI	CCNNNNNNNGG	2 cut(s)	342, 413
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	29, 38
BseXI	GCAGC	5 cut(s)	70, 73, 475, 758, 761
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	625, 762, 897
BshNI	GGYRCC	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	342, 413
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	3 cut(s)	625, 762, 897
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	835, 908
Bsp19I	CCATGG	1 cut(s)	904
BspACI	CCGC	2 cut(s)	98, 414
BspANI	GGCC	3 cut(s)	625, 762, 897
BspLI	GGNNCC	4 cut(s)	228, 404, 452, 910
BspOI	GCTAGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	903, 916
BspQI	GCTCTTC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	620, 904
BssMI	GATC	2 cut(s)	835, 908
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	620, 904
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	93, 561
Bst4CI	ACNGT	3 cut(s)	378, 517, 783
Bst6I	CTCTTC	1 cut(s)	679
BstC8I	GCNNGC	4 cut(s)	150, 474, 804, 899
BstDSI	CCRYGG	1 cut(s)	904
BstF5I	GGATG	5 cut(s)	53, 256, 274, 355, 530
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	2 cut(s)	838, 911
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	835, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
BstNI	CCWGG	2 cut(s)	93, 561
BstNSI	RCATGY	2 cut(s)	710, 729
BstPAI	GACNNNNGTC	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	91, 559
BstV1I	GCAGC	5 cut(s)	70, 73, 475, 758, 761
BstX2I	RGATCY	1 cut(s)	908
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	908
BsuRI	GGCC	3 cut(s)	625, 762, 897
BtgI	CCRYGG	1 cut(s)	904
BtsCI	GGATG	5 cut(s)	53, 256, 274, 355, 530
Cac8I	GCNNGC	4 cut(s)	150, 474, 804, 899
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	95, 760
Csp6I	GTAC	4 cut(s)	30, 403, 417, 927
CspCI	CAANNNNNGTGG	2 cut(s)	800, 835
CviAII	CATG	6 cut(s)	175, 209, 663, 707, 726, 905
CviQI	GTAC	4 cut(s)	30, 403, 417, 927
DpnI	GATC	2 cut(s)	837, 910
DpnII	GATC	2 cut(s)	835, 908
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	620, 904
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	91, 559
EcoT14I	CCWWGG	2 cut(s)	620, 904
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	620, 904
FaeI	CATG	6 cut(s)	178, 212, 666, 710, 729, 908
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	6 cut(s)	174, 208, 662, 706, 725, 904
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	5 cut(s)	84, 87, 489, 747, 750
FokI	GGATG	5 cut(s)	60, 263, 281, 362, 517
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	5 cut(s)	84, 87, 489, 747, 750
FspBI	CTAG	3 cut(s)	149, 309, 828
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	5 cut(s)	84, 87, 489, 747, 750
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	3 cut(s)	625, 762, 897
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	6 cut(s)	178, 212, 666, 710, 729, 908
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HphI	GGTGA	2 cut(s)	521, 554
Hpy166II	GTNNAC	2 cut(s)	381, 938
Hpy188I	TCNGA	4 cut(s)	358, 580, 655, 840
Hpy188III	TCNNGA	2 cut(s)	224, 870
Hpy8I	GTNNAC	2 cut(s)	381, 938
HpyAV	CCTTC	8 cut(s)	259, 290, 385, 425, 440, 585, 788, 843
HpyCH4III	ACNGT	3 cut(s)	378, 517, 783
HpyCH4V	TGCA	6 cut(s)	262, 272, 368, 491, 710, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
Hsp92II	CATG	6 cut(s)	178, 212, 666, 710, 729, 908
HspAI	GCGC	1 cut(s)	901
KpnI	GGTACC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	835, 908
LguI	GCTCTTC	1 cut(s)	679
LmnI	GCTCC	5 cut(s)	94, 226, 456, 668, 865
Lsp1109I	GCAGC	5 cut(s)	70, 73, 475, 758, 761
LweI	GCATC	2 cut(s)	80, 259
MaeI	CTAG	3 cut(s)	149, 309, 828
MaeIII	GTNAC	2 cut(s)	182, 542
MalI	GATC	2 cut(s)	837, 910
MboI	GATC	2 cut(s)	835, 908
MboII	GAAGA	3 cut(s)	335, 512, 696
MflI	RGATCY	1 cut(s)	908
MhlI	GDGCHC	1 cut(s)	453
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	7 cut(s)	110, 214, 288, 328, 494, 564, 641
MluNI	TGGCCA	1 cut(s)	897
MmeI	TCCRAC	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	897
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	3 cut(s)	338, 876, 943
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	752
MspR9I	CCNGG	2 cut(s)	93, 561
MvaI	CCWGG	2 cut(s)	93, 561
MwoI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
NcoI	CCATGG	1 cut(s)	904
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	835, 908
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	6 cut(s)	178, 212, 666, 710, 729, 908
NlaIV	GGNNCC	4 cut(s)	228, 404, 452, 910
NmuCI	GTSAC	2 cut(s)	182, 542
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	710, 729
PciSI	GCTCTTC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	5 cut(s)	85, 88, 490, 748, 751
PshAI	GACNNNNGTC	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	91, 559
PspGI	CCWGG	2 cut(s)	91, 559
PspN4I	GGNNCC	4 cut(s)	228, 404, 452, 910
PspPI	GGNCC	2 cut(s)	95, 760
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	31, 404, 418, 928
RsaNI	GTAC	4 cut(s)	30, 403, 417, 927
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	3 cut(s)	338, 876, 943
SatI	GCNGC	5 cut(s)	84, 87, 489, 747, 750
Sau3AI	GATC	2 cut(s)	835, 908
Sau96I	GGNCC	2 cut(s)	95, 760
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	93, 561
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	80, 259
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	7 cut(s)	110, 214, 288, 328, 494, 564, 641
SsiI	CCGC	2 cut(s)	98, 414
SspMI	CTAG	3 cut(s)	149, 309, 828
StyD4I	CCNGG	2 cut(s)	91, 559
StyI	CCWWGG	2 cut(s)	620, 904
TaaI	ACNGT	3 cut(s)	378, 517, 783
TaqI	TCGA	1 cut(s)	871
TasI	AATT	7 cut(s)	110, 214, 288, 328, 494, 564, 641
TatI	WGTACW	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	338, 876, 943
Tru9I	TTAA	3 cut(s)	338, 876, 943
TseFI	GTSAC	2 cut(s)	182, 542
TseI	GCWGC	5 cut(s)	83, 86, 488, 746, 749
Tsp45I	GTSAC	2 cut(s)	182, 542
TspDTI	ATGAA	3 cut(s)	163, 519, 644
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	4 cut(s)	214, 328, 494, 641
XceI	RCATGY	2 cut(s)	710, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	3 cut(s)	149, 309, 828
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.