Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

154635 .. 156376

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00355.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTGACAAAGATGAAGCAGCGACGCGTGGAAATGATTGGGAAGTTGTTTCTCTTACTGCTTCAGCTTACGCTGCTGCTCCTGGTCCTAAACCAGTAGTGGACTCGAAAGATGATGATCACAAGGAAGTTACTCCTTGTTACGAAGCTGAGACATCTCATCCCTTATACATGTCTCGCCACTTTGTTTTCCCACCAACTGGTCAGCTTGAGAATACTAGTGACCTTACCGAGGCTAGCTTAACGGGGTCTCATTGCAAGGAAGGGAGTGATTTGAGTCTGAAAGGGTTGGATTTATCAGATGATTTCGGAGGACTTGAGTTTTCCGAGGATAAAGGCAAGAAAGAAGAAAACATTTACACGACAGCTATGAGTTCTCTGGACGATGAAAGAGCTATCGGTGGCTCACACGTGTATGAACCTGTTGAAGAACCGACCGAGCCTGTTTCTCCTTCTGATGTTACACTTGATCTGAATCCTATTAAAGATGATGAGGTAGCAAACTCGCCACCTAGCGAAGAAGCTTGGTGGAAAAGAAGCGTTGCCTCTTTGATTGCCCAAGCGAAAGAAACTAATACAGTTTGGTCCATCTGCATAGCCGCAGCTGTAATGGGAATTGTGATTCTTGGCCAACATTGGCAACAGGAGAGGTGGCAGATTTTGCAGCAAAAGTGGGAATCAAGCATTGGAAACGAGAAAGCTGGAAGATTGATGGGGCCAATCTCTCGACTAAAACAAGCATTTGTCGGGGGACAGCGGCGGGATTCATTCATCCGAGCCAGCGCCCAAAACGACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.22

Weight (kDa)

4.66

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	600, 757, 760
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	48
AcvI	CACGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	200, 232
AflIII	ACRYGT	4 cut(s)	26, 171, 409, 411
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	9 cut(s)	68, 149, 208, 240, 368, 395, 524, 605, 701
AluI	AGCT	9 cut(s)	68, 149, 208, 240, 368, 395, 524, 605, 701
Alw26I	GTCTC	3 cut(s)	146, 180, 255
AoxI	GGCC	2 cut(s)	628, 716
ApeKI	GCWGC	5 cut(s)	20, 74, 77, 602, 664
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	3 cut(s)	86, 585, 716
AsuNHI	GCTAGC	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	86, 585
BalI	TGGCCA	1 cut(s)	630
BbrPI	CACGTG	1 cut(s)	412
BbvI	GCAGC	5 cut(s)	32, 61, 64, 614, 676
BccI	CCATC	2 cut(s)	596, 706
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	146, 180, 255
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	3 cut(s)	219, 237, 513
BfoI	RGCGCY	1 cut(s)	786
BisI	GCNGC	7 cut(s)	21, 75, 78, 600, 603, 665, 758
BlsI	GCNGC	7 cut(s)	22, 76, 79, 601, 604, 666, 759
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	86, 585
BmgT120I	GGNCC	3 cut(s)	86, 585, 716
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	230, 338
BsaAI	YACGTR	1 cut(s)	412
BsaBI	GATNNNNATC	2 cut(s)	117, 474
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	231, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 232
Bse1I	ACTGG	2 cut(s)	95, 205
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	117, 474
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	231, 327
BseGI	GGATG	2 cut(s)	160, 771
BseJI	GATNNNNATC	2 cut(s)	117, 474
BseLI	CCNNNNNNNGG	2 cut(s)	200, 232
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	95, 205
BseXI	GCAGC	5 cut(s)	32, 61, 64, 614, 676
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	2 cut(s)	438, 796
BshFI	GGCC	2 cut(s)	630, 718
BsiEI	CGRYCG	2 cut(s)	438, 796
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	2 cut(s)	200, 232
BsmAI	GTCTC	3 cut(s)	146, 180, 255
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	630, 718
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	118, 469
BspACI	CCGC	3 cut(s)	600, 757, 760
BspANI	GGCC	2 cut(s)	630, 718
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	717
BspOI	GCTAGC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	95, 205
BssECI	CCNNGG	2 cut(s)	231, 327
BssMI	GATC	2 cut(s)	118, 469
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	580, 797
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	238, 781
BstDEI	CTNAG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	160, 771
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	2 cut(s)	121, 472
BstMAI	GTCTC	3 cut(s)	146, 180, 255
BstMBI	GATC	2 cut(s)	118, 469
BstMCI	CGRYCG	2 cut(s)	438, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 661
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	5 cut(s)	32, 61, 64, 614, 676
BsuRI	GGCC	2 cut(s)	630, 718
BtsCI	GGATG	2 cut(s)	160, 771
Cac8I	GCNNGC	2 cut(s)	238, 781
CfoI	GCGC	1 cut(s)	785
Cfr13I	GGNCC	3 cut(s)	86, 585, 716
CseI	GACGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	120, 471
DpnII	GATC	2 cut(s)	118, 469
EaeI	YGGCCR	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	86, 585
Eco57I	CTGAAG	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	175
FaiI	YATR	5 cut(s)	169, 173, 371, 417, 596
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	7 cut(s)	21, 75, 78, 600, 603, 665, 758
FokI	GGATG	2 cut(s)	147, 758
Fsp4HI	GCNGC	7 cut(s)	21, 75, 78, 600, 603, 665, 758
FspBI	CTAG	3 cut(s)	219, 237, 513
GlaI	GCGC	1 cut(s)	784
GluI	GCNGC	7 cut(s)	21, 75, 78, 600, 603, 665, 758
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	630, 718
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	785
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	6 cut(s)	104, 277, 475, 622, 677, 764
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	7 cut(s)	282, 301, 311, 328, 457, 474, 776
Hpy188III	TCNNGA	2 cut(s)	380, 726
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	257, 462
HpyCH4III	ACNGT	2 cut(s)	580, 797
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	3 cut(s)	258, 594, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 661
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	783
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 469
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	5 cut(s)	32, 61, 64, 614, 676
MaeI	CTAG	3 cut(s)	219, 237, 513
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	4 cut(s)	130, 140, 221, 460
MalI	GATC	2 cut(s)	120, 471
MboI	GATC	2 cut(s)	118, 469
MboII	GAAGA	4 cut(s)	359, 440, 530, 717
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	1 cut(s)	615
MluI	ACGCGT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	98, 286
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	226, 305, 322, 487, 556, 642
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	3 cut(s)	242, 483, 799
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	605, 757
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	74, 661
NdeII	GATC	2 cut(s)	118, 469
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	475, 622, 677, 764
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	7 cut(s)	22, 76, 79, 601, 604, 666, 759
PleI	GAGTC	2 cut(s)	98, 285
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	2 cut(s)	98, 285
Ppu21I	YACGTR	1 cut(s)	412
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	82
PspCI	CACGTG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	3 cut(s)	86, 585, 716
PvuII	CAGCTG	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	242, 483, 799
SatI	GCNGC	7 cut(s)	21, 75, 78, 600, 603, 665, 758
Sau3AI	GATC	2 cut(s)	118, 469
Sau96I	GGNCC	3 cut(s)	86, 585, 716
SchI	GAGTC	2 cut(s)	98, 286
ScrFI	CCNGG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	86, 585
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	209, 317
SmoI	CTYRAG	2 cut(s)	209, 317
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	3 cut(s)	600, 757, 760
SspMI	CTAG	3 cut(s)	219, 237, 513
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	580, 797
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	107, 727
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	615
TauI	GCSGC	2 cut(s)	602, 760
TfiI	GAWTC	4 cut(s)	475, 622, 677, 764
Tru1I	TTAA	3 cut(s)	242, 483, 799
Tru9I	TTAA	3 cut(s)	242, 483, 799
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	5 cut(s)	20, 74, 77, 602, 664
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	30, 402, 432, 756, 760
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	86, 585
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	3 cut(s)	219, 237, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.