Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006306.1

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1184

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006306.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

gccttagaaggattaactttcaatgacaaagagcaggctgtatatggtgctgcgaaatttggttttgatggtgaaacagttcttcatggttcatccacatatggtgagaacacagatattcctggacttacagaacctttagagcaagatttagatttttctggggacatctctcaatccccaaggtcaatgaaagatgataaatttgatgtttcggacctcccctgtggagcttggtggaaaagaagagcttcctccttgtattctcatgctaaggaagcaaatgcatattggtctattttcgtagcagcaactgtgatgggccttgtgatacttgggcagcgatggcagaacgaaaggtggctggctctacaacagaagtggcaattcagtattgatcaggtctccaatcctttcatgattgctttctgctttgatggaaaggaaactgaagttgctacttacaagtgtaacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

4.68

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	56, 203
AcuI	CTGAAG	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	233, 251
AluI	AGCT	2 cut(s)	233, 251
Alw26I	GTCTC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	50, 308, 340
ApoI	RAATTY	2 cut(s)	56, 203
Asp700I	GAANNNNTTC	2 cut(s)	78, 250
AspS9I	GGNCC	2 cut(s)	217, 322
AsuHPI	GGTGA	2 cut(s)	83, 116
AvaII	GGWCC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	37, 320, 352
BccI	CCATC	4 cut(s)	62, 313, 339, 431
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	51, 309, 341
BlsI	GCNGC	3 cut(s)	52, 310, 342
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 322
BmrFI	CCNGG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	37, 320, 352
BshFI	GGCC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	417
BspQI	GCTCTTC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	79, 316
Bst6I	CTCTTC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	36, 366
BstDEI	CTNAG	2 cut(s)	4, 273
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 346
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	37, 320, 352
BsuRI	GGCC	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	36, 366
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	217, 322
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	3 cut(s)	86, 269, 418
CviJI	RGCY	6 cut(s)	38, 233, 251, 324, 364, 368
CviKI_1	RGCY	6 cut(s)	38, 233, 251, 324, 364, 368
DdeI	CTNAG	2 cut(s)	4, 273
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	89, 272, 421
FaiI	YATR	8 cut(s)	43, 45, 87, 100, 102, 270, 289, 419
FalI	AAGNNNNNCTT	3 cut(s)	235, 267, 458
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	85, 268, 417
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	51, 309, 341
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	51, 309, 341
GluI	GCNGC	3 cut(s)	51, 309, 341
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	89, 272, 421
HphI	GGTGA	2 cut(s)	83, 116
Hpy188I	TCNGA	2 cut(s)	217, 479
Hpy188III	TCNNGA	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	79, 316
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 346
HpyF3I	CTNAG	2 cut(s)	4, 273
Hsp92II	CATG	3 cut(s)	89, 272, 421
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	7 cut(s)	20, 108, 135, 147, 238, 350, 386
Lsp1109I	GCAGC	3 cut(s)	37, 320, 352
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	74, 258
MluCI	AATT	3 cut(s)	56, 203, 386
MnlI	CCTC	2 cut(s)	230, 265
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	2 cut(s)	78, 250
MseI	TTAA	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	278, 346
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	3 cut(s)	89, 272, 421
NsiI	ATGCAT	1 cut(s)	289
PagI	TCATGA	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	78, 250
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	52, 310, 342
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	217, 322
PstNI	CAGNNNCTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	51, 309, 341
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	2 cut(s)	217, 322
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	7 cut(s)	139, 188, 222, 235, 253, 362, 405
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	3 cut(s)	56, 203, 386
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	79, 316
TasI	AATT	3 cut(s)	56, 203, 386
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	3 cut(s)	50, 308, 340
TspDTI	ATGAA	4 cut(s)	74, 81, 206, 406
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	56, 203
XmnI	GAANNNNTTC	2 cut(s)	78, 250
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.