Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

50582554 .. 50587047

Gene Structure 4494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAGATAATGAGGAGGGAGAGGAGAGTAATGGTCGTGGGAATGGATGGGAAGTTGTATCACTTACAGCGTCGGCATACGCTGCTGCTCCCAGTCCGAGAGCAGTGGAATTGAGCAGTGATGATAAGAGTGGAACTTATGGAGAGCAAGCTGAAACATCCCGTGCTTTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAATCAGCATGAGAATTTACCTGTGGAGCCCGACAGCAGTGAAGTGGATGATGAAAAGGTGCAGAAGGACGCAGTAGATGAGATAAGCACTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTTCAGATGAGTTTGCAGGAATACAGTTCTTAAATGAGAAGGATAACAGGCTACCCATTGGCGGTACAGAATTTGGAGAAGGCACGGCCTTAGAAGGATTAACTTTCAATGACAAAGAGCAGGCTGTATATGGTGCTGCGAAATTTGGTTTTGATGGTGAAACAGTTCTTCATGGTTCATCCACATATGGTGAGAACACAGATATTCCTGGACTTACAGAACCTTTAGAGCAAGATTTAGATTTTTCTGGGGACATCTCTCAATCCCCAAGGTCAATGAAAGATGATAAATTTGATGTTTCGGACCTCCCCTGTGGAGCTTGGTGGAAAAGAAGAGCTTCCTCCTTGTATTCTCATGCTAAGGAAGCAAATGCATATTGGTCTATTTTCGTAGCAGCAACTGTGATGGGCCTTGTGATACTTGGGCAGCGATGGCAGAACGAAAGGTGGCTGGCTCTACAACAGAAGTGGCAATTCAGTATTGATCAGGTTGGTTTATCGCTACTGTTTTCCATTATGAGTCTCTTATTTTTGTATTTTGTTTGGTTTGGTTTTCTGTTGGGGGTGTCCTGGAATCAATTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.55

Weight (kDa)

4.35

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	414
AcsI	RAATTY	5 cut(s)	214, 328, 422, 494, 641
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	342, 413
AgsI	TTSAA	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	559, 920
AluBI	AGCT	3 cut(s)	152, 671, 689
AluI	AGCT	3 cut(s)	152, 671, 689
Alw26I	GTCTC	1 cut(s)	878
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	438, 760
ApeKI	GCWGC	5 cut(s)	83, 86, 488, 746, 778
ApoI	RAATTY	5 cut(s)	214, 328, 422, 494, 641
Asp700I	GAANNNNTTC	3 cut(s)	516, 688, 929
AspS9I	GGNCC	2 cut(s)	655, 760
AsuHPI	GGTGA	2 cut(s)	521, 554
AvaII	GGWCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	70, 73, 475, 758, 790
BccI	CCATC	4 cut(s)	42, 500, 751, 777
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	2 cut(s)	561, 922
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	5 cut(s)	84, 87, 489, 747, 779
BlsI	GCNGC	5 cut(s)	85, 88, 490, 748, 780
Bme1390I	CCNGG	2 cut(s)	561, 922
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	655, 760
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	561, 922
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 413
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	561, 922
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	5 cut(s)	53, 158, 253, 355, 530
BseLI	CCNNNNNNNGG	2 cut(s)	342, 413
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	29, 38
BseXI	GCAGC	5 cut(s)	70, 73, 475, 758, 790
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	440, 762
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	342, 413
BsmAI	GTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	440, 762
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	835
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	440, 762
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	561, 922
Bst4CI	ACNGT	4 cut(s)	378, 517, 754, 858
Bst6I	CTCTTC	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	150, 474, 804
BstDEI	CTNAG	3 cut(s)	291, 442, 711
BstF5I	GGATG	5 cut(s)	53, 158, 253, 355, 530
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
BstNI	CCWGG	2 cut(s)	561, 922
BstSCI	CCNGG	2 cut(s)	559, 920
BstV1I	GCAGC	5 cut(s)	70, 73, 475, 758, 790
BsuRI	GGCC	2 cut(s)	440, 762
BtgZI	GCGATG	1 cut(s)	796
BtsCI	GGATG	5 cut(s)	53, 158, 253, 355, 530
BtsI	GCAGTG	3 cut(s)	111, 124, 244
BtsIMutI	CAGTG	4 cut(s)	111, 124, 244, 288
Cac8I	GCNNGC	3 cut(s)	150, 474, 804
CaiI	CAGNNNCTG	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	655, 760
CseI	GACGC	2 cut(s)	60, 278
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	800, 835
CviAII	CATG	4 cut(s)	175, 209, 524, 707
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	3 cut(s)	291, 442, 711
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	559, 920
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	4 cut(s)	178, 212, 527, 710
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	4 cut(s)	174, 208, 523, 706
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	5 cut(s)	84, 87, 489, 747, 779
FokI	GGATG	5 cut(s)	60, 145, 260, 362, 517
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	84, 87, 489, 747, 779
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	5 cut(s)	84, 87, 489, 747, 779
HaeIII	GGCC	2 cut(s)	440, 762
HgaI	GACGC	2 cut(s)	60, 278
Hin1II	CATG	4 cut(s)	178, 212, 527, 710
HinfI	GANTC	2 cut(s)	871, 925
HphI	GGTGA	2 cut(s)	521, 554
Hpy188I	TCNGA	3 cut(s)	99, 358, 655
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	259, 290, 385, 425, 440
HpyCH4III	ACNGT	4 cut(s)	378, 517, 754, 858
HpyCH4V	TGCA	3 cut(s)	262, 368, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
HpyF3I	CTNAG	3 cut(s)	291, 442, 711
Hsp92II	CATG	4 cut(s)	178, 212, 527, 710
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	1 cut(s)	835
LguI	GCTCTTC	1 cut(s)	679
LmnI	GCTCC	3 cut(s)	94, 226, 668
Lsp1109I	GCAGC	5 cut(s)	70, 73, 475, 758, 790
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	3 cut(s)	335, 512, 696
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	8 cut(s)	110, 214, 328, 422, 494, 641, 824, 929
MlyI	GAGTC	1 cut(s)	880
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	7 cut(s)	7, 10, 16, 286, 313, 668, 703
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	3 cut(s)	516, 688, 929
MseI	TTAA	3 cut(s)	338, 383, 452
MspR9I	CCNGG	2 cut(s)	561, 922
MvaI	CCWGG	2 cut(s)	561, 922
MwoI	GCNNNNNNNGC	3 cut(s)	83, 716, 784
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	4 cut(s)	178, 212, 527, 710
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	679
PdmI	GAANNNNTTC	3 cut(s)	516, 688, 929
PfeI	GAWTC	1 cut(s)	925
PfoI	TCCNGGA	2 cut(s)	559, 920
PkrI	GCNGC	5 cut(s)	85, 88, 490, 748, 780
PleI	GAGTC	1 cut(s)	879
PpsI	GAGTC	1 cut(s)	879
Psp6I	CCWGG	2 cut(s)	559, 920
PspGI	CCWGG	2 cut(s)	559, 920
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	655, 760
PstNI	CAGNNNCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	3 cut(s)	338, 383, 452
SatI	GCNGC	5 cut(s)	84, 87, 489, 747, 779
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	2 cut(s)	655, 760
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	2 cut(s)	561, 922
SduI	GDGCHC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	655
Sse9I	AATT	8 cut(s)	110, 214, 328, 422, 494, 641, 824, 929
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	559, 920
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	4 cut(s)	378, 517, 754, 858
TasI	AATT	8 cut(s)	110, 214, 328, 422, 494, 641, 824, 929
TfiI	GAWTC	1 cut(s)	925
Tru1I	TTAA	3 cut(s)	338, 383, 452
Tru9I	TTAA	3 cut(s)	338, 383, 452
TscAI	CASTG	4 cut(s)	111, 124, 244, 295
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	5 cut(s)	83, 86, 488, 746, 778
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	163, 267, 512, 519, 644
TspRI	CASTG	4 cut(s)	111, 124, 244, 295
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	5 cut(s)	214, 328, 422, 494, 641
XmnI	GAANNNNTTC	3 cut(s)	516, 688, 929
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.