Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004705.1

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

55518 .. 59768

Gene Structure 4251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004705.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggatttggaggaagtttggctgcaacgacgacgttgcgtggacggcaccagaatgataagagagtacggtgggcgtttattttcgtcttcaacccaacaccccccttatcggaacgacgtcgtcgcgatctccgatctgatcttatccggtcacgctctcagaaacagtaagtccttcaatatggcagataatgaggagggagaggagagtaatggtcgtgggaatggatgggaagttgtatcacttacagcgtcggcatacgctgctgctcccagtccgagagaagtggaattgagcagtgatgataagagtggaacttatggagagcaagctgaaacatcccgtgctttgttcatgtctggtcactttgtttttccacccaatcagcatgagaatttacctgtggagcctgacagcagtgaagttgatgatgaaaaggtgcagaaggacgtagtagatgagataagcactgaggaagggggtaggtctaggggaaaggaggaagaaaatttgaccttaaaagggttggatgtttcagatgagtttgcaggaatacggttcttaaatgagaaggataacaggctacccattggcggtacagaatttggagaaggcacagccttagaaggattaactttcaatgacaaagagcaggctgtatatggtgctgcgaaatttggttttgatggtgaaacagttcttcatggttcatccacatatggtgagaacacagatattcctggacttacagaacctttagagcaagatttagatttttctggggacatctctcaatccccaaggtcaatgaaagatgataaatttgatgtttcggccctcccctgtggagcttggtggaaaagaagagcttcctccttgtattctcatgctaaggaagcaaatgcatattggtctattttcgtagcagcaactgtgatgggccttgtgatacttgggcagcgatggcagaacgaaaggtggctggctctacaacagaagtggcaattcagtattgatcagaaaggaggaagggttttaggtccaatatctcgacttaaagatgtaatagttggtggccagcgacgtggatcctttattggaggcagcgcctcaagtgaactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

41.37

Weight (kDa)

4.78

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	2 cut(s)	1086, 1099
AcoI	YGGCCR	1 cut(s)	1078
AcsI	RAATTY	5 cut(s)	397, 511, 605, 677, 824
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	68, 601
AfiI	CCNNNNNNNGG	3 cut(s)	111, 525, 596
AgsI	TTSAA	3 cut(s)	93, 181, 643
AjiI	CACGTC	1 cut(s)	1088
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	3 cut(s)	335, 854, 872
AluI	AGCT	3 cut(s)	335, 854, 872
AlwI	GGATC	2 cut(s)	1086, 1099
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	837, 943, 1078
ApeKI	GCWGC	7 cut(s)	22, 266, 269, 671, 929, 961, 1107
ApoI	RAATTY	5 cut(s)	397, 511, 605, 677, 824
Asp700I	GAANNNNTTC	2 cut(s)	699, 871
AspLEI	GCGC	1 cut(s)	1112
AspS9I	GGNCC	3 cut(s)	838, 943, 1043
AsuHPI	GGTGA	2 cut(s)	704, 737
AvaII	GGWCC	1 cut(s)	1043
BalI	TGGCCA	1 cut(s)	1080
BamHI	GGATCC	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	7 cut(s)	9, 253, 256, 658, 941, 973, 1119
BccI	CCATC	4 cut(s)	225, 683, 934, 960
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	1 cut(s)	1018
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	1113
BisI	GCNGC	7 cut(s)	23, 267, 270, 672, 930, 962, 1108
BlsI	GCNGC	7 cut(s)	24, 268, 271, 673, 931, 963, 1109
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	1 cut(s)	1043
BmgBI	CACGTC	1 cut(s)	1088
BmgT120I	GGNCC	3 cut(s)	838, 943, 1043
BmiI	GGNNCC	3 cut(s)	49, 411, 1093
BmrFI	CCNGG	1 cut(s)	744
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	1099
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	803
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	1020, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 525, 596
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	1 cut(s)	803
BseGI	GGATG	4 cut(s)	236, 341, 538, 713
BseLI	CCNNNNNNNGG	3 cut(s)	111, 525, 596
BseMII	CTCAG	2 cut(s)	175, 465
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	212, 221
BseXI	GCAGC	7 cut(s)	9, 253, 256, 658, 941, 973, 1119
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	839, 945, 1080
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	3 cut(s)	111, 525, 596
BsmFI	GGGAC	1 cut(s)	800
BsnI	GGCC	3 cut(s)	839, 945, 1080
Bsp143I	GATC	5 cut(s)	129, 136, 141, 1018, 1091
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	3 cut(s)	839, 945, 1080
BspCNI	CTCAG	2 cut(s)	174, 466
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	49, 411, 1093
BspPI	GGATC	2 cut(s)	1086, 1099
BspQI	GCTCTTC	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	803
BssMI	GATC	5 cut(s)	129, 136, 141, 1018, 1091
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	803
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	5 cut(s)	71, 170, 561, 700, 937
Bst6I	CTCTTC	1 cut(s)	862
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	333, 657, 987, 1082
BstDEI	CTNAG	4 cut(s)	161, 474, 625, 894
BstF5I	GGATG	4 cut(s)	236, 341, 538, 713
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	1113
BstHHI	GCGC	1 cut(s)	1112
BstKTI	GATC	5 cut(s)	132, 139, 144, 1021, 1094
BstMBI	GATC	5 cut(s)	129, 136, 141, 1018, 1091
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 266, 899, 967
BstNI	CCWGG	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	742
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	7 cut(s)	9, 253, 256, 658, 941, 973, 1119
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	1091
BstXI	CCANNNNNNTGG	1 cut(s)	1088
BstYI	RGATCY	1 cut(s)	1091
BsuRI	GGCC	3 cut(s)	839, 945, 1080
BtgZI	GCGATG	1 cut(s)	979
BtrI	CACGTC	1 cut(s)	1088
BtsCI	GGATG	4 cut(s)	236, 341, 538, 713
BtsI	GCAGTG	2 cut(s)	307, 427
BtsIMutI	CAGTG	3 cut(s)	307, 427, 471
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	333, 657, 987, 1082
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	1 cut(s)	1112
Cfr13I	GGNCC	3 cut(s)	838, 943, 1043
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	67, 600
CspCI	CAANNNNNGTGG	2 cut(s)	983, 1018
CviAII	CATG	4 cut(s)	358, 392, 707, 890
CviQI	GTAC	2 cut(s)	67, 600
DdeI	CTNAG	4 cut(s)	161, 474, 625, 894
DpnI	GATC	5 cut(s)	131, 138, 143, 1020, 1093
DpnII	GATC	5 cut(s)	129, 136, 141, 1018, 1091
EaeI	YGGCCR	1 cut(s)	1078
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	1043
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	803
EcoT22I	ATGCAT	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	803
FaeI	CATG	4 cut(s)	361, 395, 710, 893
FalI	AAGNNNNNCTT	2 cut(s)	856, 888
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	4 cut(s)	357, 391, 706, 889
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	1018
Fnu4HI	GCNGC	7 cut(s)	23, 267, 270, 672, 930, 962, 1108
FokI	GGATG	4 cut(s)	243, 328, 545, 700
Fsp4HI	GCNGC	7 cut(s)	23, 267, 270, 672, 930, 962, 1108
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	1111
GluI	GCNGC	7 cut(s)	23, 267, 270, 672, 930, 962, 1108
HaeII	RGCGCY	1 cut(s)	1113
HaeIII	GGCC	3 cut(s)	839, 945, 1080
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	1112
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	361, 395, 710, 893
Hin6I	GCGC	1 cut(s)	1110
HinP1I	GCGC	1 cut(s)	1110
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	704, 737
Hpy166II	GTNNAC	2 cut(s)	43, 1121
Hpy188I	TCNGA	7 cut(s)	114, 136, 141, 164, 282, 541, 1023
Hpy188III	TCNNGA	2 cut(s)	127, 1053
Hpy8I	GTNNAC	2 cut(s)	43, 1121
Hpy99I	CGWCG	7 cut(s)	33, 36, 122, 125, 128, 259, 1089
HpyAV	CCTTC	7 cut(s)	187, 442, 473, 568, 608, 623, 1026
HpyCH4III	ACNGT	5 cut(s)	71, 170, 561, 700, 937
HpyCH4IV	ACGT	4 cut(s)	34, 120, 453, 1087
HpyCH4V	TGCA	4 cut(s)	25, 445, 551, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 266, 899, 967
HpyF3I	CTNAG	4 cut(s)	161, 474, 625, 894
HpySE526I	ACGT	4 cut(s)	34, 120, 453, 1087
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	361, 395, 710, 893
HspAI	GCGC	1 cut(s)	1110
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	5 cut(s)	129, 136, 141, 1018, 1091
LguI	GCTCTTC	1 cut(s)	862
LmnI	GCTCC	3 cut(s)	277, 409, 851
Lsp1109I	GCAGC	7 cut(s)	9, 253, 256, 658, 941, 973, 1119
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	4 cut(s)	34, 120, 453, 1087
MaeIII	GTNAC	2 cut(s)	152, 365
MalI	GATC	5 cut(s)	131, 138, 143, 1020, 1093
MboI	GATC	5 cut(s)	129, 136, 141, 1018, 1091
MboII	GAAGA	4 cut(s)	81, 518, 695, 879
MflI	RGATCY	1 cut(s)	1091
MlsI	TGGCCA	1 cut(s)	1080
MluCI	AATT	7 cut(s)	293, 397, 511, 605, 677, 824, 1007
MluNI	TGGCCA	1 cut(s)	1080
MmeI	TCCRAC	1 cut(s)	510
Mox20I	TGGCCA	1 cut(s)	1080
Mph1103I	ATGCAT	1 cut(s)	910
MroXI	GAANNNNTTC	2 cut(s)	699, 871
MscI	TGGCCA	1 cut(s)	1080
MseI	TTAA	5 cut(s)	521, 566, 635, 1059, 1126
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	1080
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	45, 266, 899, 967
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	5 cut(s)	129, 136, 141, 1018, 1091
NlaIII	CATG	4 cut(s)	361, 395, 710, 893
NlaIV	GGNNCC	3 cut(s)	49, 411, 1093
NmuCI	GTSAC	2 cut(s)	152, 365
NruI	TCGCGA	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	910
PciSI	GCTCTTC	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	2 cut(s)	699, 871
PflFI	GACNNNGTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	7 cut(s)	24, 268, 271, 673, 931, 963, 1109
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	3 cut(s)	49, 411, 1093
PspPI	GGNCC	3 cut(s)	838, 943, 1043
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	1091
PsyI	GACNNNGTC	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	2 cut(s)	68, 601
RsaNI	GTAC	2 cut(s)	67, 600
RseI	CAYNNNNRTG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	862
SaqAI	TTAA	5 cut(s)	521, 566, 635, 1059, 1126
SatI	GCNGC	7 cut(s)	23, 267, 270, 672, 930, 962, 1108
Sau3AI	GATC	5 cut(s)	129, 136, 141, 1018, 1091
Sau96I	GGNCC	3 cut(s)	838, 943, 1043
ScrFI	CCNGG	1 cut(s)	744
SinI	GGWCC	1 cut(s)	1043
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	1114
SmoI	CTYRAG	1 cut(s)	1114
Sse9I	AATT	7 cut(s)	293, 397, 511, 605, 677, 824, 1007
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	1 cut(s)	803
TaaI	ACNGT	5 cut(s)	71, 170, 561, 700, 937
TaiI	ACGT	4 cut(s)	37, 123, 456, 1090
TaqI	TCGA	1 cut(s)	1054
TasI	AATT	7 cut(s)	293, 397, 511, 605, 677, 824, 1007
Tru1I	TTAA	5 cut(s)	521, 566, 635, 1059, 1126
Tru9I	TTAA	5 cut(s)	521, 566, 635, 1059, 1126
TscAI	CASTG	3 cut(s)	307, 427, 478
TseFI	GTSAC	2 cut(s)	152, 365
TseI	GCWGC	7 cut(s)	22, 266, 269, 671, 929, 961, 1107
Tsp45I	GTSAC	2 cut(s)	152, 365
TspDTI	ATGAA	5 cut(s)	346, 450, 695, 702, 827
TspRI	CASTG	3 cut(s)	307, 427, 478
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	1043
XapI	RAATTY	5 cut(s)	397, 511, 605, 677, 824
XmnI	GAANNNNTTC	2 cut(s)	699, 871
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.