Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

21888476 .. 21891228

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAGATAATGAGGAGGTAGAGGAAAGTACTGCTCGTGGGAATGGATGGGAAGTTGTCTCACTTACAGAATCAACATATGCTGCTTCTCCTGGTCCACAAGGAGTTGAACTGAACAATGACGGCAAGATCAATACCTTTGGAGAGCAAGCAGAGACTTCTCATGCGCTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAGTCAGCATGAGAATTTGCCTGTGGAGACTGACAGCAGCAAAATTCATAATGAACATGTGGACAAGGATGCAGTAACTGAGGCTGAGATAGGTATTGAAGGTGGTAGGTCCAGTGGAAAGGAGGAAGAAACTTTGACTTTGAAAGGGTTGAATGTTCCGGATGAGTTTACGGGAATGCCGTTTTCAAAAGAGAAGGATAATATGCTATCCATTGGTGGTACAGACTTTGAAGAAGGCGCTACACTGGAAGGGTCTATGGCTGACAAAGAGCAGACTATATATGATGCTGCGAAATATAGTTTAGATGGTGAAACAGCTCTTGGTGGTTCAACCCCATATGGTGAGAGCACTGCTCTTCCTGGACGTATTGAACCTTCAGAACAAGGTTTAGATTCTTCTGAGGACATCTCACAATCCCCAAGGCCACCGCATGATGATAAATTTGACGTTTCTGGCCTGCCCTGTGGAGCGTGGTGGAAAAGAAGAGCTGCTTCCTTGTATTGTCATGCAAAAGAAGCAAATGCATATTGGTCTATTTTTGTAGCAGCAGCTGTGATGGGGCTTGTGTTACTTGGGCAGCGGTGGCAGAATGAGAGGTGGCAGGCTCTACAACAAAAGTGGCAGTTGAGCGTCAATGATCAGAAAACAGGAAGGATGTTTGGTCCCATATCTCGACTAAAAGACGTGATAGTTGGCAGCCAGAGCCGAGGATCCTTTATCCGGGTCAGCTCCTCAAGCGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

34.27

Weight (kDa)

4.63

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	2 cut(s)	629, 781
AclWI	GGATC	2 cut(s)	906, 919
AcsI	RAATTY	3 cut(s)	214, 243, 641
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	31, 421
AfiI	CCNNNNNNNGG	1 cut(s)	921
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	8 cut(s)	110, 299, 343, 352, 387, 431, 531, 572
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	2 cut(s)	91, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	4 cut(s)	518, 689, 752, 930
AluI	AGCT	4 cut(s)	518, 689, 752, 930
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	3 cut(s)	64, 149, 221
AlwI	GGATC	2 cut(s)	906, 919
AlwNI	CAGNNNCTG	2 cut(s)	278, 752
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	2 cut(s)	623, 655
ApeKI	GCWGC	8 cut(s)	83, 237, 488, 689, 746, 749, 778, 897
ApoI	RAATTY	3 cut(s)	214, 243, 641
AspLEI	GCGC	2 cut(s)	169, 440
AspS9I	GGNCC	3 cut(s)	95, 309, 863
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	2 cut(s)	521, 554
AvaII	GGWCC	3 cut(s)	95, 309, 863
BamHI	GGATCC	1 cut(s)	911
BarI	GAAGNNNNNNTAC	2 cut(s)	559, 591
BauI	CACGAG	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	8 cut(s)	70, 249, 475, 676, 758, 761, 790, 909
BccI	CCATC	3 cut(s)	42, 500, 751
BceAI	ACGGC	2 cut(s)	139, 364
BciT130I	CCWGG	2 cut(s)	93, 561
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	3 cut(s)	64, 149, 221
BfoI	RGCGCY	1 cut(s)	441
BisI	GCNGC	8 cut(s)	84, 238, 489, 690, 747, 750, 779, 898
BlsI	GCNGC	8 cut(s)	85, 239, 490, 691, 748, 751, 780, 899
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	93, 561, 923
Bme18I	GGWCC	3 cut(s)	95, 309, 863
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	3 cut(s)	95, 309, 863
BmiI	GGNNCC	2 cut(s)	865, 913
BmrFI	CCNGG	3 cut(s)	93, 561, 923
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	259, 475
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	4 cut(s)	538, 570, 593, 625
BpuEI	CTTGAG	1 cut(s)	919
BpuMI	CCSGG	1 cut(s)	923
BsaJI	CCNNGG	2 cut(s)	620, 907
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	921
Bse1I	ACTGG	3 cut(s)	201, 312, 450
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	93, 561
BseDI	CCNNGG	2 cut(s)	620, 907
BseGI	GGATG	4 cut(s)	53, 274, 367, 861
BseLI	CCNNNNNNNGG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	270, 276, 591
BseNI	ACTGG	3 cut(s)	201, 312, 450
BseRI	GAGGAG	2 cut(s)	29, 922
BseXI	GCAGC	8 cut(s)	70, 249, 475, 676, 758, 761, 790, 909
BshFI	GGCC	2 cut(s)	625, 657
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	359, 922
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	1 cut(s)	921
BsmAI	GTCTC	3 cut(s)	64, 149, 221
BsmFI	GGGAC	1 cut(s)	849
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	625, 657
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	129, 838, 911
BspACI	CCGC	2 cut(s)	629, 781
BspANI	GGCC	2 cut(s)	625, 657
BspCNI	CTCAG	3 cut(s)	271, 277, 592
BspEI	TCCGGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	865, 913
BspPI	GGATC	2 cut(s)	906, 919
BspQI	GCTCTTC	2 cut(s)	561, 679
BsrI	ACTGG	3 cut(s)	201, 312, 450
BssECI	CCNNGG	2 cut(s)	620, 907
BssMI	GATC	3 cut(s)	129, 838, 911
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	93, 561
Bst6I	CTCTTC	2 cut(s)	561, 679
BstC8I	GCNNGC	3 cut(s)	150, 659, 804
BstDEI	CTNAG	3 cut(s)	279, 285, 600
BstF5I	GGATG	4 cut(s)	53, 274, 367, 861
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	169, 440
BstKTI	GATC	3 cut(s)	132, 841, 914
BstMAI	GTCTC	3 cut(s)	64, 149, 221
BstMBI	GATC	3 cut(s)	129, 838, 911
BstMWI	GCNNNNNNNGC	4 cut(s)	716, 784, 903, 936
BstNI	CCWGG	2 cut(s)	93, 561
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	91, 559, 921
BstV1I	GCAGC	8 cut(s)	70, 249, 475, 676, 758, 761, 790, 909
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BsuRI	GGCC	2 cut(s)	625, 657
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	4 cut(s)	53, 274, 367, 861
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	319, 443, 549
Cac8I	GCNNGC	3 cut(s)	150, 659, 804
CaiI	CAGNNNCTG	2 cut(s)	278, 752
CfoI	GCGC	2 cut(s)	169, 440
Cfr13I	GGNCC	3 cut(s)	95, 309, 863
CseI	GACGC	1 cut(s)	820
Csp6I	GTAC	2 cut(s)	30, 420
CspCI	CAANNNNNGTGG	2 cut(s)	800, 835
CviAII	CATG	6 cut(s)	164, 175, 209, 257, 632, 707
CviQI	GTAC	2 cut(s)	30, 420
DdeI	CTNAG	3 cut(s)	279, 285, 600
DpnI	GATC	3 cut(s)	131, 840, 913
DpnII	GATC	3 cut(s)	129, 838, 911
Eam1104I	CTCTTC	2 cut(s)	561, 679
EarI	CTCTTC	2 cut(s)	561, 679
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	95, 309, 863
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	91, 559
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	6 cut(s)	167, 178, 212, 260, 635, 710
FalI	AAGNNNNNCTT	3 cut(s)	676, 708, 928
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	6 cut(s)	163, 174, 208, 256, 631, 706
FauNDI	CATATG	2 cut(s)	79, 538
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	8 cut(s)	84, 238, 489, 690, 747, 750, 779, 898
FokI	GGATG	4 cut(s)	60, 281, 374, 868
Fsp4HI	GCNGC	8 cut(s)	84, 238, 489, 690, 747, 750, 779, 898
GlaI	GCGC	2 cut(s)	168, 439
GluI	GCNGC	8 cut(s)	84, 238, 489, 690, 747, 750, 779, 898
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	625, 657
HapII	CCGG	2 cut(s)	359, 922
HgaI	GACGC	1 cut(s)	820
HhaI	GCGC	2 cut(s)	169, 440
Hin1II	CATG	6 cut(s)	167, 178, 212, 260, 635, 710
Hin6I	GCGC	2 cut(s)	167, 438
HinP1I	GCGC	2 cut(s)	167, 438
HinfI	GANTC	3 cut(s)	71, 593, 941
HpaII	CCGG	2 cut(s)	359, 922
HphI	GGTGA	2 cut(s)	521, 554
Hpy166II	GTNNAC	3 cut(s)	98, 262, 369
Hpy188I	TCNGA	3 cut(s)	580, 601, 843
Hpy188III	TCNNGA	2 cut(s)	359, 873
Hpy8I	GTNNAC	3 cut(s)	98, 262, 369
HpyAV	CCTTC	6 cut(s)	293, 388, 428, 443, 585, 846
HpyCH4IV	ACGT	3 cut(s)	565, 648, 885
HpyCH4V	TGCA	3 cut(s)	272, 710, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	716, 784, 903, 936
HpyF3I	CTNAG	3 cut(s)	279, 285, 600
HpySE526I	ACGT	3 cut(s)	565, 648, 885
Hsp92II	CATG	6 cut(s)	167, 178, 212, 260, 635, 710
HspAI	GCGC	2 cut(s)	167, 438
Kpn2I	TCCGGA	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	3 cut(s)	129, 838, 911
LguI	GCTCTTC	2 cut(s)	561, 679
LmnI	GCTCC	2 cut(s)	668, 935
Lsp1109I	GCAGC	8 cut(s)	70, 249, 475, 676, 758, 761, 790, 909
LweI	GCATC	2 cut(s)	259, 475
MaeII	ACGT	3 cut(s)	565, 648, 885
MaeIII	GTNAC	3 cut(s)	182, 274, 768
MalI	GATC	3 cut(s)	131, 840, 913
MboI	GATC	3 cut(s)	129, 838, 911
MboII	GAAGA	5 cut(s)	338, 443, 548, 588, 696
MflI	RGATCY	1 cut(s)	911
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	3 cut(s)	214, 243, 641
MlyI	GAGTC	1 cut(s)	935
MnlI	CCTC	9 cut(s)	7, 10, 16, 274, 316, 595, 789, 902, 943
Mph1103I	ATGCAT	1 cut(s)	727
MroI	TCCGGA	1 cut(s)	358
MseI	TTAA	1 cut(s)	946
MspA1I	CMGCKG	2 cut(s)	752, 781
MspI	CCGG	2 cut(s)	359, 922
MspR9I	CCNGG	3 cut(s)	93, 561, 923
Mva1269I	GAATGC	1 cut(s)	381
MvaI	CCWGG	2 cut(s)	93, 561
MwoI	GCNNNNNNNGC	4 cut(s)	716, 784, 903, 936
NciI	CCSGG	1 cut(s)	923
NdeI	CATATG	2 cut(s)	79, 538
NdeII	GATC	3 cut(s)	129, 838, 911
NlaIII	CATG	6 cut(s)	167, 178, 212, 260, 635, 710
NlaIV	GGNNCC	2 cut(s)	865, 913
NmeAIII	GCCGAG	1 cut(s)	932
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PciSI	GCTCTTC	2 cut(s)	561, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	71, 593
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	8 cut(s)	85, 239, 490, 691, 748, 751, 780, 899
PleI	GAGTC	1 cut(s)	935
PpsI	GAGTC	1 cut(s)	935
PscI	ACATGT	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	91, 559
PspGI	CCWGG	2 cut(s)	91, 559
PspN4I	GGNNCC	2 cut(s)	865, 913
PspPI	GGNCC	3 cut(s)	95, 309, 863
PstNI	CAGNNNCTG	2 cut(s)	278, 752
PsuI	RGATCY	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	31, 421
RsaNI	GTAC	2 cut(s)	30, 420
SapI	GCTCTTC	2 cut(s)	561, 679
SaqAI	TTAA	1 cut(s)	946
SatI	GCNGC	8 cut(s)	84, 238, 489, 690, 747, 750, 779, 898
Sau3AI	GATC	3 cut(s)	129, 838, 911
Sau96I	GGNCC	3 cut(s)	95, 309, 863
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	3 cut(s)	93, 561, 923
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	2 cut(s)	259, 475
SinI	GGWCC	3 cut(s)	95, 309, 863
SmlI	CTYRAG	1 cut(s)	934
SmoI	CTYRAG	1 cut(s)	934
Sse9I	AATT	3 cut(s)	214, 243, 641
SsiI	CCGC	2 cut(s)	629, 781
StyD4I	CCNGG	3 cut(s)	91, 559, 921
StyI	CCWWGG	1 cut(s)	620
TaiI	ACGT	3 cut(s)	568, 651, 888
TaqI	TCGA	1 cut(s)	874
TasI	AATT	3 cut(s)	214, 243, 641
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	71, 593
Tru1I	TTAA	1 cut(s)	946
Tru9I	TTAA	1 cut(s)	946
TscAI	CASTG	3 cut(s)	319, 450, 556
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	8 cut(s)	83, 237, 488, 689, 746, 749, 778, 897
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	163, 236, 267
TspRI	CASTG	3 cut(s)	319, 450, 556
VpaK11BI	GGWCC	3 cut(s)	95, 309, 863
XapI	RAATTY	3 cut(s)	214, 243, 641
XceI	RCATGY	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.