Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

14854133 .. 14855742

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAGATAATGACGAGGGAGAGGAAAGTACTGTTCATGGTAAGATGGCGGATAATGAGGAGGGGGAGGAAAGTACTGCTCGTGGGAATGAATGGGAAGTTGTACAACTTACAGCGTCAACGTATGCTGCTGCTCCTTGTCCAGGAGGAATTGAGTTGAGCAATGAGGAGAAGAGTGATATCTATGGTGAGCATGCGGAAACTTCTTGTGCTCTTTTCATGTCTGGTCACTTTGCTTTTCCACCCAGTCAGCATGAGAATTTGCCTTTGAAGTCTGATAGAAGCGAACGTGTGGACAAGGATGTCTTAGCTGAGATAGGTATTGAAGAAGAAGGTAGGTCCAGTGGAAAGGAGGAAGAAACTTTGACTTTGAAAGGGTTGAATGCTCCAGATGAGTTTGTGGGGAAACAGTCTGTAACTGATAAGGATAACATGCAGTTGATTGGTGATACAGTGTTTGAAGAAGGGTTAACTTCGGCTGACAAAGACCAGACTATAATGGATGCTGCTATATATCATTTTGACGGTGAAACAGATCTGAGCGGCTTAGCTGATTATGGTGAGAGCCCCGCTATTCCTGGACTTAATGAACCTTCAGAGCAAGGTTTAGGTTTCTCTGAGGATAGCCCGCAATCCCCAAGGTCTCTTAAAGATGATGAATTTGGTGTTTCTCGCCTGCCATGTGGAGCTTGGTGGAAAAGAAGAGCTGCTTCCTTGTATTCTCATGCAAAAGAAGCTAATGCAGTTTGGTCTATTTTCATAGCAGCGGCTGTGATGGGGCTTGTGTTACTTGGGCAGCGGTGGCAAAATGAAAGGTGGCTGGCTCTACAACAGAAGTGGCTGTTGAGCGTCAATGATCAGAAAACAGGAAGGATGATTGGTCCCATATCTCGTCTTAAAGACGTTATAGTGAGCAGCCACCGCCGAAGATCCTTTATCAGGAGCAGCTCAAGTGAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.17

Weight (kDa)

4.6

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	543
AciI	CCGC	8 cut(s)	50, 197, 543, 570, 629, 767, 799, 922
AclWI	GGATC	1 cut(s)	924
AcsI	RAATTY	2 cut(s)	259, 659
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	31, 76, 105
AfiI	CCNNNNNNNGG	2 cut(s)	143, 939
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	5 cut(s)	271, 326, 373, 382, 461
AjnI	CCWGG	2 cut(s)	142, 577
AluBI	AGCT	6 cut(s)	311, 551, 689, 707, 737, 948
AluI	AGCT	6 cut(s)	311, 551, 689, 707, 737, 948
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	924
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	8 cut(s)	128, 131, 506, 707, 764, 796, 915, 945
ApoI	RAATTY	2 cut(s)	259, 659
AspS9I	GGNCC	2 cut(s)	339, 881
AsuHPI	GGTGA	4 cut(s)	200, 458, 539, 572
AvaII	GGWCC	2 cut(s)	339, 881
BanII	GRGCYC	1 cut(s)	569
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	8 cut(s)	115, 118, 493, 694, 776, 808, 927, 957
BccI	CCATC	2 cut(s)	40, 769
BciT130I	CCWGG	2 cut(s)	144, 579
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	648
BglII	AGATCT	1 cut(s)	535
BlpI	GCTNAGC	1 cut(s)	547
BmcAI	AGTACT	2 cut(s)	31, 76
Bme1390I	CCNGG	2 cut(s)	144, 579
Bme18I	GGWCC	2 cut(s)	339, 881
BmgT120I	GGNCC	2 cut(s)	339, 881
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	2 cut(s)	144, 579
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	934
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 939
Bse1I	ACTGG	2 cut(s)	246, 342
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	144, 579
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	3 cut(s)	307, 508, 879
BseLI	CCNNNNNNNGG	2 cut(s)	143, 939
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	303, 530, 609
BseNI	ACTGG	2 cut(s)	246, 342
BseRI	GAGGAG	2 cut(s)	74, 182
BseXI	GCAGC	8 cut(s)	115, 118, 493, 694, 776, 808, 927, 957
BsiHKAI	GWGCWC	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	2 cut(s)	143, 939
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	867
BsmI	GAATGC	1 cut(s)	388
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	214, 569
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	535, 856, 929
Bsp1720I	GCTNAGC	1 cut(s)	547
BspACI	CCGC	8 cut(s)	50, 197, 543, 570, 629, 767, 799, 922
BspCNI	CTCAG	3 cut(s)	304, 531, 610
BspLI	GGNNCC	1 cut(s)	883
BspPI	GGATC	1 cut(s)	924
BspQI	GCTCTTC	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	246, 342
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	3 cut(s)	535, 856, 929
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	144, 579
Bst4CI	ACNGT	4 cut(s)	34, 411, 454, 527
Bst6I	CTCTTC	2 cut(s)	167, 697
BstAUI	TGTACA	1 cut(s)	103
BstC8I	GCNNGC	4 cut(s)	195, 629, 677, 822
BstDEI	CTNAG	5 cut(s)	307, 312, 539, 547, 618
BstENI	CCTNNNNNAGG	2 cut(s)	141, 937
BstF5I	GGATG	3 cut(s)	307, 508, 879
BstKTI	GATC	3 cut(s)	538, 859, 932
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	3 cut(s)	535, 856, 929
BstMWI	GCNNNNNNNGC	3 cut(s)	734, 802, 921
BstNI	CCWGG	2 cut(s)	144, 579
BstNSI	RCATGY	2 cut(s)	197, 436
BstSCI	CCNGG	2 cut(s)	142, 577
BstV1I	GCAGC	8 cut(s)	115, 118, 493, 694, 776, 808, 927, 957
BstX2I	RGATCY	2 cut(s)	535, 929
BstYI	RGATCY	2 cut(s)	535, 929
BtsCI	GGATG	3 cut(s)	307, 508, 879
BtsIMutI	CAGTG	2 cut(s)	349, 459
Cac8I	GCNNGC	4 cut(s)	195, 629, 677, 822
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	339, 881
CseI	GACGC	2 cut(s)	105, 838
Csp6I	GTAC	3 cut(s)	30, 75, 104
CspCI	CAANNNNNGTGG	2 cut(s)	818, 853
CviAII	CATG	7 cut(s)	38, 194, 220, 254, 433, 681, 725
CviQI	GTAC	3 cut(s)	30, 75, 104
DdeI	CTNAG	5 cut(s)	307, 312, 539, 547, 618
DpnI	GATC	3 cut(s)	537, 858, 931
DpnII	GATC	3 cut(s)	535, 856, 929
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	167, 697
EarI	CTCTTC	2 cut(s)	167, 697
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	339, 881
Eco57I	CTGAAG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	2 cut(s)	141, 937
EcoRII	CCWGG	2 cut(s)	142, 577
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	638
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	7 cut(s)	41, 197, 223, 257, 436, 684, 728
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 694, 726
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	7 cut(s)	37, 193, 219, 253, 432, 680, 724
FauI	CCCGC	2 cut(s)	577, 636
FbaI	TGATCA	1 cut(s)	856
FokI	GGATG	3 cut(s)	314, 515, 886
FriOI	GRGCYC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	372
HgaI	GACGC	2 cut(s)	105, 838
Hin1II	CATG	7 cut(s)	41, 197, 223, 257, 436, 684, 728
HincII	GTYRAC	2 cut(s)	120, 471
HindII	GTYRAC	2 cut(s)	120, 471
HpaI	GTTAAC	1 cut(s)	471
HphI	GGTGA	4 cut(s)	200, 458, 539, 572
Hpy166II	GTNNAC	3 cut(s)	120, 295, 471
Hpy188I	TCNGA	5 cut(s)	277, 540, 598, 619, 861
Hpy188III	TCNNGA	2 cut(s)	389, 940
Hpy8I	GTNNAC	3 cut(s)	120, 295, 471
HpyAV	CCTTC	4 cut(s)	326, 458, 603, 864
HpyCH4III	ACNGT	4 cut(s)	34, 411, 454, 527
HpyCH4IV	ACGT	3 cut(s)	122, 289, 903
HpyCH4V	TGCA	3 cut(s)	436, 728, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	734, 802, 921
HpyF3I	CTNAG	5 cut(s)	307, 312, 539, 547, 618
HpySE526I	ACGT	3 cut(s)	122, 289, 903
Hsp92II	CATG	7 cut(s)	41, 197, 223, 257, 436, 684, 728
Ksp22I	TGATCA	1 cut(s)	856
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	535, 856, 929
LguI	GCTCTTC	1 cut(s)	697
LmnI	GCTCC	4 cut(s)	139, 391, 686, 942
Lsp1109I	GCAGC	8 cut(s)	115, 118, 493, 694, 776, 808, 927, 957
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	3 cut(s)	122, 289, 903
MaeIII	GTNAC	3 cut(s)	227, 415, 786
MalI	GATC	3 cut(s)	537, 858, 931
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	3 cut(s)	535, 856, 929
MboII	GAAGA	7 cut(s)	184, 338, 341, 368, 473, 714, 939
MflI	RGATCY	2 cut(s)	535, 929
MhlI	GDGCHC	2 cut(s)	214, 569
MluCI	AATT	3 cut(s)	150, 259, 659
MseI	TTAA	5 cut(s)	470, 585, 648, 897, 961
MspA1I	CMGCKG	2 cut(s)	767, 799
MspR9I	CCNGG	2 cut(s)	144, 579
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	2 cut(s)	144, 579
MwoI	GCNNNNNNNGC	3 cut(s)	734, 802, 921
NdeII	GATC	3 cut(s)	535, 856, 929
NlaIII	CATG	7 cut(s)	41, 197, 223, 257, 436, 684, 728
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	197, 436
PaeI	GCATGC	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	697
PctI	GAATGC	1 cut(s)	388
PfoI	TCCNGGA	2 cut(s)	142, 577
Psp6I	CCWGG	2 cut(s)	142, 577
PspGI	CCWGG	2 cut(s)	142, 577
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	2 cut(s)	339, 881
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	535, 929
RsaI	GTAC	3 cut(s)	31, 76, 105
RsaNI	GTAC	3 cut(s)	30, 75, 104
SapI	GCTCTTC	1 cut(s)	697
SaqAI	TTAA	5 cut(s)	470, 585, 648, 897, 961
Sau3AI	GATC	3 cut(s)	535, 856, 929
Sau96I	GGNCC	2 cut(s)	339, 881
ScaI	AGTACT	2 cut(s)	31, 76
ScrFI	CCNGG	2 cut(s)	144, 579
SduI	GDGCHC	2 cut(s)	214, 569
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	2 cut(s)	339, 881
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	3 cut(s)	150, 259, 659
SsiI	CCGC	8 cut(s)	50, 197, 543, 570, 629, 767, 799, 922
StyD4I	CCNGG	2 cut(s)	142, 577
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	4 cut(s)	34, 411, 454, 527
TaiI	ACGT	3 cut(s)	125, 292, 906
TasI	AATT	3 cut(s)	150, 259, 659
TatI	WGTACW	3 cut(s)	29, 74, 103
TauI	GCSGC	2 cut(s)	546, 770
Tru1I	TTAA	5 cut(s)	470, 585, 648, 897, 961
Tru9I	TTAA	5 cut(s)	470, 585, 648, 897, 961
TscAI	CASTG	2 cut(s)	349, 459
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	8 cut(s)	128, 131, 506, 707, 764, 796, 915, 945
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	7 cut(s)	26, 105, 208, 603, 672, 748, 825
TspRI	CASTG	2 cut(s)	349, 459
VpaK11BI	GGWCC	2 cut(s)	339, 881
XagI	CCTNNNNNAGG	2 cut(s)	141, 937
XapI	RAATTY	2 cut(s)	259, 659
XceI	RCATGY	2 cut(s)	197, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	687
ZrmI	AGTACT	2 cut(s)	31, 76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.