Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Reverse (-)

48433139 .. 48435680

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAAATGGTTTTCTTCGCTGTTCGAAGAAACAGTAAGTCCTTCAAGATGGCAGATAATGTGGAGGGAGAGGAGAGTAATGGTCGTGGGAATGGATGGGAAGTTGTATCACTTACAGCATCAGCATACGCTGCTGCTCCCGGTCCGAGAGAAGTGGAATTGAGCAGTGATGATAAGAGTGGAACTTATGGAGAGCAAGCTGAAACATCTCGTGCTTTGTTCATGTCTGGTCACTTTGTTTTTCCACCCAATCAGCATGAGAATTTACCTGTGGAGCCTGACAGCAGTGAAGTTGATGATGAAAAGGTGCAGAAGGATGCAGTAGATGAGATAAGCACTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTTCAGATGAGTTTGCAGGAATACAGTTCTTAAATGAGAAGGATAACAGGCTACCCATTGGCGGTACAGAATTTGGAGAAGGCACGGCCTTAGAAGGATTAAATTTTGATGACAAAGAGCAGGATGTATATGGTGCTGCGAAATTTGGTTTTGATGGTGAAACAGTTCTTCATGGTTCATCCACATATGGTGAGAACACAGATATTCCTGGACTTACAGAACCTTCAGAGCAAGATTTAGATTTTTCTGGGGACATCTCTCAATCCCCAAGGTCAATGAAAGATGATAAATTTGATGTTTCGGACCTCCCCTGTGGAGCTTGGTGGAAAAGAAGAGCTTCCTCCTTGTATTCTCATGCAAAGGAAGCAAATGCATATTGGTCTATTTTCGTAGCAGCAGCTGTGATGGGCCTTGTGATACTTGGGCAGCGATGGCAGAACGAAAGGTGGCTGGCTCTACAACAGAAGTGGCAATTCAGTGTTGATCAGAAAGGAGGAAGGGTTTTAGGTCCAATATCTCGACTTAAAGATGTAATAGTTGGTGGCCAGCGACGTGGATCCTTTATTGGAGGCAGCGCCTCAAGTGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.19

Weight (kDa)

4.59

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	951, 964
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	6 cut(s)	262, 376, 470, 502, 542, 689
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	390, 461
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	953
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	4 cut(s)	200, 719, 737, 800
AluI	AGCT	4 cut(s)	200, 719, 737, 800
AlwI	GGATC	2 cut(s)	951, 964
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	3 cut(s)	486, 808, 943
ApeKI	GCWGC	7 cut(s)	131, 134, 536, 794, 797, 826, 972
ApoI	RAATTY	6 cut(s)	262, 376, 470, 502, 542, 689
Asp700I	GAANNNNTTC	2 cut(s)	564, 736
AspLEI	GCGC	1 cut(s)	977
AspS9I	GGNCC	4 cut(s)	143, 703, 808, 908
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	569, 602
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	3 cut(s)	143, 703, 908
BalI	TGGCCA	1 cut(s)	945
BamHI	GGATCC	1 cut(s)	956
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	7 cut(s)	118, 121, 523, 806, 809, 838, 984
BccI	CCATC	5 cut(s)	43, 90, 548, 799, 825
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	1 cut(s)	883
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	978
BisI	GCNGC	7 cut(s)	132, 135, 537, 795, 798, 827, 973
BlsI	GCNGC	7 cut(s)	133, 136, 538, 796, 799, 828, 974
Bme1390I	CCNGG	2 cut(s)	141, 609
Bme18I	GGWCC	3 cut(s)	143, 703, 908
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	4 cut(s)	143, 703, 808, 908
BmiI	GGNNCC	2 cut(s)	276, 958
BmrFI	CCNGG	2 cut(s)	141, 609
BmsI	GCATC	2 cut(s)	128, 307
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	964
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 461
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	668
BseGI	GGATG	5 cut(s)	101, 322, 403, 529, 578
BseLI	CCNNNNNNNGG	2 cut(s)	390, 461
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	7 cut(s)	118, 121, 523, 806, 809, 838, 984
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	3 cut(s)	488, 810, 945
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	390, 461
BsmFI	GGGAC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	488, 810, 945
Bsp119I	TTCGAA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	883, 956
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	3 cut(s)	488, 810, 945
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	276, 958
BspPI	GGATC	2 cut(s)	951, 964
BspQI	GCTCTTC	1 cut(s)	727
BspT104I	TTCGAA	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	2 cut(s)	883, 956
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	668
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	35, 426, 565
Bst6I	CTCTTC	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	198, 852, 947
BstDEI	CTNAG	2 cut(s)	339, 490
BstF5I	GGATG	5 cut(s)	101, 322, 403, 529, 578
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	977
BstKTI	GATC	2 cut(s)	886, 959
BstMBI	GATC	2 cut(s)	883, 956
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 764, 832
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	139, 607
BstV1I	GCAGC	7 cut(s)	118, 121, 523, 806, 809, 838, 984
BstX2I	RGATCY	1 cut(s)	956
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	488, 810, 945
BtgZI	GCGATG	1 cut(s)	844
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	5 cut(s)	101, 322, 403, 529, 578
BtsI	GCAGTG	2 cut(s)	172, 292
BtsIMutI	CAGTG	4 cut(s)	172, 292, 336, 883
Cac8I	GCNNGC	3 cut(s)	198, 852, 947
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	977
Cfr13I	GGNCC	4 cut(s)	143, 703, 808, 908
CpoI	CGGWCCG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	465
CspCI	CAANNNNNGTGG	2 cut(s)	848, 883
CspI	CGGWCCG	1 cut(s)	143
CviAII	CATG	4 cut(s)	223, 257, 572, 755
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	2 cut(s)	339, 490
DpnI	GATC	2 cut(s)	885, 958
DpnII	GATC	2 cut(s)	883, 956
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	668
Eco47I	GGWCC	3 cut(s)	143, 703, 908
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	668
FaeI	CATG	4 cut(s)	226, 260, 575, 758
FalI	AAGNNNNNCTT	2 cut(s)	721, 753
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	4 cut(s)	222, 256, 571, 754
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	883
Fnu4HI	GCNGC	7 cut(s)	132, 135, 537, 795, 798, 827, 973
FokI	GGATG	5 cut(s)	108, 329, 410, 536, 565
Fsp4HI	GCNGC	7 cut(s)	132, 135, 537, 795, 798, 827, 973
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	976
GluI	GCNGC	7 cut(s)	132, 135, 537, 795, 798, 827, 973
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	488, 810, 945
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	977
Hin1II	CATG	4 cut(s)	226, 260, 575, 758
Hin6I	GCGC	1 cut(s)	975
HinP1I	GCGC	1 cut(s)	975
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	569, 602
Hpy166II	GTNNAC	1 cut(s)	986
Hpy188I	TCNGA	5 cut(s)	147, 406, 628, 703, 888
Hpy188III	TCNNGA	2 cut(s)	46, 918
Hpy8I	GTNNAC	1 cut(s)	986
Hpy99I	CGWCG	1 cut(s)	954
HpyAV	CCTTC	8 cut(s)	52, 307, 338, 433, 473, 488, 633, 891
HpyCH4III	ACNGT	3 cut(s)	35, 426, 565
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	5 cut(s)	310, 320, 416, 758, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 764, 832
HpyF3I	CTNAG	2 cut(s)	339, 490
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	4 cut(s)	226, 260, 575, 758
HspAI	GCGC	1 cut(s)	975
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	2 cut(s)	883, 956
LguI	GCTCTTC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	142, 274, 716
Lsp1109I	GCAGC	7 cut(s)	118, 121, 523, 806, 809, 838, 984
LweI	GCATC	2 cut(s)	128, 307
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	885, 958
MboI	GATC	2 cut(s)	883, 956
MboII	GAAGA	5 cut(s)	7, 39, 383, 560, 744
MflI	RGATCY	1 cut(s)	956
MlsI	TGGCCA	1 cut(s)	945
MluCI	AATT	8 cut(s)	158, 262, 376, 470, 502, 542, 689, 872
MluNI	TGGCCA	1 cut(s)	945
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	9 cut(s)	58, 64, 334, 361, 716, 751, 887, 962, 988
Mox20I	TGGCCA	1 cut(s)	945
Mph1103I	ATGCAT	1 cut(s)	775
MroXI	GAANNNNTTC	2 cut(s)	564, 736
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	5 cut(s)	386, 431, 500, 924, 991
Msp20I	TGGCCA	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	141, 609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	131, 764, 832
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	2 cut(s)	883, 956
NlaIII	CATG	4 cut(s)	226, 260, 575, 758
NlaIV	GGNNCC	2 cut(s)	276, 958
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	727
PdmI	GAANNNNTTC	2 cut(s)	564, 736
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	7 cut(s)	133, 136, 538, 796, 799, 828, 974
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	276, 958
PspPI	GGNCC	4 cut(s)	143, 703, 808, 908
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	956
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
Rsr2I	CGGWCCG	1 cut(s)	143
RsrII	CGGWCCG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	727
SaqAI	TTAA	5 cut(s)	386, 431, 500, 924, 991
SatI	GCNGC	7 cut(s)	132, 135, 537, 795, 798, 827, 973
Sau3AI	GATC	2 cut(s)	883, 956
Sau96I	GGNCC	4 cut(s)	143, 703, 808, 908
ScrFI	CCNGG	2 cut(s)	141, 609
SfaNI	GCATC	2 cut(s)	128, 307
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	3 cut(s)	143, 703, 908
SmlI	CTYRAG	1 cut(s)	979
SmoI	CTYRAG	1 cut(s)	979
Sse9I	AATT	8 cut(s)	158, 262, 376, 470, 502, 542, 689, 872
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	139, 607
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	3 cut(s)	35, 426, 565
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	2 cut(s)	25, 919
TasI	AATT	8 cut(s)	158, 262, 376, 470, 502, 542, 689, 872
Tru1I	TTAA	5 cut(s)	386, 431, 500, 924, 991
Tru9I	TTAA	5 cut(s)	386, 431, 500, 924, 991
TscAI	CASTG	4 cut(s)	172, 292, 343, 883
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	7 cut(s)	131, 134, 536, 794, 797, 826, 972
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	5 cut(s)	211, 315, 560, 567, 692
TspRI	CASTG	4 cut(s)	172, 292, 343, 883
VpaK11BI	GGWCC	3 cut(s)	143, 703, 908
XapI	RAATTY	6 cut(s)	262, 376, 470, 502, 542, 689
XmnI	GAANNNNTTC	2 cut(s)	564, 736
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.