Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007189

Physical Location & Seq

Genomic Coordinates Forward (+)

73601977 .. 73603539

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTAAGAGTGGAACTTATGGAGAGCAAGCTGAAACATCTCGTGCTTTGTTCATGTCTGGTCATTTTGTTTTTCCATGATAATTTACCTGTGGAGCCTGACAGCAGTGAAGTTGATGATGAAAAGGTGCAGAAGAACGCAGTAGATGAGATAAGCACTGAGGAAGGGGGTAGGTCTAGGGGAAAGGAGGAAGAAAATTTGACCTTAAAAGGGTTGGATGTTTCAGATGAGTTTGCAGGAATACAGTTTTTAAATGAGAAGGATAGCAGGCTACCCATTGGCGGTACAGAATTTGGAGAAGGCACGGCCTTAGAAGGATTGAATTTCGATGACAAAGAGCAGGCTGTATATGGTGCTGCGAAATTTGGTTTTGATGGTGAAACAGTTCTTCGTGGTTCATCCACATATGGTGAGAACACAGATATTCCTGGACTTGCAGAACCTTCAGAGCAAGATTCAGATTTTTCTGGGACATCTCTCGATCCCCAAGCAGCAGCTGTGATGGGCCTTGTGATACTTGGGCAGCGATGGCAGAATGAAAGGTGGCAGGCTCTGCAACAGAAGTGGCATTTCAGTGTTGATCAGAAAGCGGGAAGGGTTTTAGGTCCAATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016482 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061919 GO:0070727 GO:0071211 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:1904962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.51

Weight (kDa)

4.43

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45980 AT4G00355 AT4G00355 AT4G00355 AT4G00355
fragaria_vesca	FvH4_7g14520 FvH4_7g14520
malus_domestica	MD01G1065100.v1.1 MD07G1135300.v1.1
prunus_persica	Prupe.2G172100_v2.0.a1
pyrus_communis	pycom01g09440 pycom07g13250
rosa_chinensis	RchiOBHm_Chr1g0355951
rosa_laevigata	RLG00000021271 RLG00000028113
rosa_multiflora	Rmu_sc0004705.1_g000013 Rmu_sc0006306.1_g000001 Rmu_sc0007127.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299900
rosa_rugosa	Rorug01G0248900
rosa_samantha	Rh1AG261700 Rh1BG229500 Rh1CG244800 Rh1DG257600
rosa_wichuraiana	Rw1G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	282, 590
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	4 cut(s)	196, 290, 322, 362
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	210, 281
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	3 cut(s)	31, 497, 614
AluI	AGCT	3 cut(s)	31, 497, 614
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	497, 553
AoxI	GGCC	2 cut(s)	306, 505
ApeKI	GCWGC	4 cut(s)	356, 491, 494, 523
ApoI	RAATTY	4 cut(s)	196, 290, 322, 362
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	505, 605
AsuHPI	GGTGA	2 cut(s)	389, 422
AvaII	GGWCC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	343, 503, 506, 535
BccI	CCATC	3 cut(s)	368, 496, 522
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	580
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	4 cut(s)	357, 492, 495, 524
BlsI	GCNGC	4 cut(s)	358, 493, 496, 525
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	505, 605
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 281
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	223, 398
BseLI	CCNNNNNNNGG	2 cut(s)	210, 281
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	343, 503, 506, 535
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	308, 507
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	210, 281
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	308, 507
Bsp143I	GATC	2 cut(s)	481, 580
BspACI	CCGC	2 cut(s)	282, 590
BspANI	GGCC	2 cut(s)	308, 507
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	476
BssMI	GATC	2 cut(s)	481, 580
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	246, 385
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	4 cut(s)	29, 269, 342, 549
BstDEI	CTNAG	2 cut(s)	159, 310
BstF5I	GGATG	2 cut(s)	223, 398
BstKTI	GATC	2 cut(s)	484, 583
BstMBI	GATC	2 cut(s)	481, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	529, 553
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	343, 503, 506, 535
BsuRI	GGCC	2 cut(s)	308, 507
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	223, 398
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	112, 156, 580
Cac8I	GCNNGC	4 cut(s)	29, 269, 342, 549
CaiI	CAGNNNCTG	2 cut(s)	497, 553
Cfr13I	GGNCC	2 cut(s)	505, 605
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	545, 580
CviAII	CATG	2 cut(s)	54, 77
CviJI	RGCY	9 cut(s)	31, 97, 271, 308, 344, 497, 507, 551, 614
CviKI_1	RGCY	9 cut(s)	31, 97, 271, 308, 344, 497, 507, 551, 614
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	159, 310
DpnI	GATC	2 cut(s)	483, 582
DpnII	GATC	2 cut(s)	481, 580
DraI	TTTAAA	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	2 cut(s)	57, 80
FaiI	YATR	7 cut(s)	20, 55, 78, 349, 351, 406, 408
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	53, 76
FauI	CCCGC	1 cut(s)	583
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	4 cut(s)	357, 492, 495, 524
FokI	GGATG	2 cut(s)	230, 385
Fsp4HI	GCNGC	4 cut(s)	357, 492, 495, 524
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	4 cut(s)	357, 492, 495, 524
HaeIII	GGCC	2 cut(s)	308, 507
Hin1II	CATG	2 cut(s)	57, 80
HinfI	GANTC	1 cut(s)	455
HphI	GGTGA	2 cut(s)	389, 422
Hpy188I	TCNGA	4 cut(s)	226, 448, 460, 585
Hpy188III	TCNNGA	1 cut(s)	479
HpyAV	CCTTC	6 cut(s)	158, 253, 293, 308, 453, 588
HpyCH4III	ACNGT	2 cut(s)	246, 385
HpyCH4V	TGCA	4 cut(s)	130, 236, 437, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	529, 553
HpyF3I	CTNAG	2 cut(s)	159, 310
Hsp92II	CATG	2 cut(s)	57, 80
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	481, 580
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	4 cut(s)	343, 503, 506, 535
MaeI	CTAG	1 cut(s)	177
MalI	GATC	2 cut(s)	483, 582
MboI	GATC	2 cut(s)	481, 580
MboII	GAAGA	3 cut(s)	145, 203, 380
MluCI	AATT	5 cut(s)	82, 196, 290, 322, 362
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	154, 181
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	206, 251
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	529, 553
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	2 cut(s)	481, 580
NlaIII	CATG	2 cut(s)	57, 80
NlaIV	GGNNCC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	358, 493, 496, 525
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	505, 605
PstNI	CAGNNNCTG	2 cut(s)	497, 553
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	206, 251
SatI	GCNGC	4 cut(s)	357, 492, 495, 524
Sau3AI	GATC	2 cut(s)	481, 580
Sau96I	GGNCC	2 cut(s)	505, 605
ScrFI	CCNGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	5 cut(s)	82, 196, 290, 322, 362
SsiI	CCGC	2 cut(s)	282, 590
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	246, 385
TaqI	TCGA	2 cut(s)	327, 480
TasI	AATT	5 cut(s)	82, 196, 290, 322, 362
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	206, 251
Tru9I	TTAA	2 cut(s)	206, 251
TscAI	CASTG	3 cut(s)	112, 163, 580
TseI	GCWGC	4 cut(s)	356, 491, 494, 523
TspDTI	ATGAA	4 cut(s)	42, 135, 387, 552
TspRI	CASTG	3 cut(s)	112, 163, 580
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	4 cut(s)	196, 290, 322, 362
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.