Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

18921024 .. 18922179

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGAAGATCGTTCGTTCTTCTTCGCTGATTCTACTTGTTGGCCTCCTTCTTTTTATGAATTTTCACGGATTTGTCCGGATCGCCGAAGCAACGAAGCGACGGATCGAGATCTCCGATGACCTAGACGACGTTGAAGACAATGAAGAAGACGAGTCATGGAAAGAGTGGGGGAAGAAAGCAACGACCCCGGAATTTGATCCGCCTCCGGATTTCACCAATATGGGATTCGATCAGATCCAAGAGGAAATGGCTAAACGGACTTTTGGAACCGTCGTCGGTTTCGTCAAGCTCCGGTTAGGCGTCCCCCGTACCAAGGATGTGGTGATTGATATTGCTATGAAATGGACAAAAGTTTTAAGAACAGGAGGGATAGGAGTAAGATTCATGGCTGTAGATCGAAGCACAGTGATGTTCAATATGCAAAATGGGAAGCTTGTGACTGAGCTAAGGGAATTCGTGCTGAGCCAAGAAGAAGCTTACGAGGTCAAGATAGGGAAGCAAGAGTTTAGAAGACCTGGAGATCCTCCATTTGAAGATGTCTTTGACAAATTTCAAGCTGAGCAAAGGAAAGATCACGAAGATGGTGATGGTAACAAGAATGATCTTACTAAGGATGAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

208

Amino Acids

23.98

Weight (kDa)

4.89

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	78, 208
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	5 cut(s)	89, 113, 194, 232, 518
AcsI	RAATTY	4 cut(s)	61, 194, 455, 551
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	137, 418, 536, 557
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	5 cut(s)	292, 436, 448, 479, 560
AluI	AGCT	5 cut(s)	292, 436, 448, 479, 560
AlwI	GGATC	5 cut(s)	89, 113, 194, 232, 518
Aor13HI	TCCGGA	2 cut(s)	78, 208
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	4 cut(s)	61, 194, 455, 551
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	208, 337, 599
BbsI	GAAGAC	3 cut(s)	144, 156, 520
BccI	CCATC	2 cut(s)	578, 584
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	393
BglII	AGATCT	1 cut(s)	111
BlpI	GCTNAGC	2 cut(s)	464, 561
Bme1390I	CCNGG	2 cut(s)	191, 519
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	191, 519
BpiI	GAAGAC	3 cut(s)	144, 156, 520
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	2 cut(s)	464, 561
BpuMI	CCSGG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	189, 315
BsaWI	WCCGGW	3 cut(s)	78, 208, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	110
BseAI	TCCGGA	2 cut(s)	78, 208
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	189, 315
BseGI	GGATG	2 cut(s)	325, 622
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	435, 455, 552
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	4 cut(s)	79, 191, 209, 295
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	45
Bsp13I	TCCGGA	2 cut(s)	78, 208
Bsp1720I	GCTNAGC	2 cut(s)	464, 561
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	436, 456, 553
BspEI	TCCGGA	2 cut(s)	78, 208
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	5 cut(s)	89, 113, 194, 232, 518
BssECI	CCNNGG	2 cut(s)	189, 315
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	274, 409
BstACI	GRCGYC	1 cut(s)	303
BstDEI	CTNAG	5 cut(s)	444, 449, 464, 561, 612
BstF5I	GGATG	2 cut(s)	325, 622
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	189, 517
BstSFI	CTRYAG	1 cut(s)	393
BstV2I	GAAGAC	3 cut(s)	144, 156, 520
BstX2I	RGATCY	3 cut(s)	111, 237, 523
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	3 cut(s)	111, 237, 523
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	325, 622
BtsIMutI	CAGTG	1 cut(s)	414
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	159, 388
CviJI	RGCY	9 cut(s)	45, 254, 292, 392, 436, 448, 468, 479, 560
CviKI_1	RGCY	9 cut(s)	45, 254, 292, 392, 436, 448, 468, 479, 560
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	5 cut(s)	444, 449, 464, 561, 612
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	162, 391
FaiI	YATR	7 cut(s)	59, 160, 224, 341, 389, 422, 625
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	158, 387
FokI	GGATG	1 cut(s)	332
FspBI	CTAG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	4 cut(s)	79, 191, 209, 295
HgaI	GACGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	162, 391
HindIII	AAGCTT	2 cut(s)	434, 477
HinfI	GANTC	4 cut(s)	31, 155, 228, 384
HpaII	CCGG	4 cut(s)	79, 191, 209, 295
HphI	GGTGA	3 cut(s)	208, 337, 599
Hpy188I	TCNGA	2 cut(s)	118, 237
Hpy188III	TCNNGA	5 cut(s)	79, 109, 209, 490, 578
Hpy99I	CGWCG	4 cut(s)	105, 134, 278, 281
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	274, 409
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	424
HpyF3I	CTNAG	5 cut(s)	444, 449, 464, 561, 612
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	162, 391
Kpn2I	TCCGGA	2 cut(s)	78, 208
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	7 cut(s)	92, 204, 222, 308, 351, 504, 531
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	439, 593
MflI	RGATCY	3 cut(s)	111, 237, 523
MluCI	AATT	5 cut(s)	61, 194, 455, 551, 620
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	6 cut(s)	56, 216, 238, 362, 478, 537
MroI	TCCGGA	2 cut(s)	78, 208
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	3 cut(s)	221, 410, 582
MspI	CCGG	4 cut(s)	79, 191, 209, 295
MspR9I	CCNGG	2 cut(s)	191, 519
MvaI	CCWGG	1 cut(s)	519
NciI	CCSGG	1 cut(s)	191
NlaIII	CATG	2 cut(s)	162, 391
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 282
PfeI	GAWTC	3 cut(s)	31, 228, 384
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	3 cut(s)	111, 237, 523
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	3 cut(s)	221, 410, 582
SaqAI	TTAA	1 cut(s)	359
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	191, 519
SetI	ASST	9 cut(s)	126, 135, 294, 438, 450, 481, 489, 520, 562
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	3 cut(s)	221, 410, 582
Sse9I	AATT	5 cut(s)	61, 194, 455, 551, 620
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	189, 517
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	274, 409
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	108, 231, 400
TasI	AATT	5 cut(s)	61, 194, 455, 551, 620
TfiI	GAWTC	3 cut(s)	31, 228, 384
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	74, 159, 356, 376
TspGWI	ACGGA	3 cut(s)	84, 118, 274
TspRI	CASTG	1 cut(s)	414
XapI	RAATTY	4 cut(s)	61, 194, 455, 551
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.