Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014660.1

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

17504 .. 18728

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014660.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgccaaaccccagagcactcttttccttcctcgtcaccgctctcggaggaaagcggcgagtccacatcaccgacgacctcgacgacgtcgtagacgacgaagaggacgacacttggaaagaatggggcaagaaatccacacaaaccttcgatccgccgccgaacgacttgtcgaagatggagttatcggagatccaggccgagatgatgaagcggcattccgggccggttttcgggttcatcaagctccgactcggagtcaaacggactcgggatatggtggctgagattgctacgaaatggagtaaacttctgagaactggatctattggggtacggttcatgggtgttgatatgagcacgatcatggtcaccatggaaagaggccaagacatggccgagttgaaggagttcgtgttgaaccaaccagaggcctacgagataaagattggagatcaagtttttcaaagacctggagatcctcctttagaccaagtcgttgagaagctccggaatgagagaacgagaattgagaatgacggttcaacagagagcaataggcaagtgaaagaggaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

193

Amino Acids

22.13

Weight (kDa)

5.15

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	510
AciI	CCGC	5 cut(s)	39, 55, 155, 158, 214
AclWI	GGATC	4 cut(s)	146, 187, 331, 473
AcoI	YGGCCR	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	233, 394, 430
AgsI	TTSAA	4 cut(s)	406, 421, 467, 546
AhdI	GACNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	195, 472
AluBI	AGCT	2 cut(s)	247, 508
AluI	AGCT	2 cut(s)	247, 508
Alw21I	GWGCWC	2 cut(s)	19, 362
AlwI	GGATC	4 cut(s)	146, 187, 331, 473
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	5 cut(s)	198, 224, 385, 396, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	28, 61, 364
AvaI	CYCGRG	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	19, 362
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	197, 474
BcnI	CCSGG	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	578
BisI	GCNGC	3 cut(s)	56, 158, 215
BlsI	GCNGC	3 cut(s)	57, 159, 216
Bme1390I	CCNGG	3 cut(s)	197, 223, 474
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	3 cut(s)	197, 223, 474
BpmI	CTGGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 444, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 394, 430
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	197, 474
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	233, 394, 430
BseMII	CTCAG	2 cut(s)	276, 305
BseNI	ACTGG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	200, 226, 387, 398, 434
BsiHKAI	GWGCWC	2 cut(s)	19, 362
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	222, 227, 511
BslI	CCNNNNNNNGG	3 cut(s)	233, 394, 430
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	200, 226, 387, 398, 434
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	19, 362
Bsp13I	TCCGGA	1 cut(s)	510
Bsp143I	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	5 cut(s)	39, 55, 155, 158, 214
BspANI	GGCC	5 cut(s)	200, 226, 387, 398, 434
BspCNI	CTCAG	2 cut(s)	277, 306
BspEI	TCCGGA	1 cut(s)	510
BspPI	GGATC	4 cut(s)	146, 187, 331, 473
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	197, 474
Bst4CI	ACNGT	3 cut(s)	339, 542, 579
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	285, 314
BstDSI	CCRYGG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	370
BstKTI	GATC	6 cut(s)	154, 195, 326, 366, 457, 481
BstMBI	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 290
BstNI	CCWGG	2 cut(s)	197, 474
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	195, 221, 472
BstSFI	CTRYAG	1 cut(s)	578
BstX2I	RGATCY	3 cut(s)	192, 323, 478
BstYI	RGATCY	3 cut(s)	192, 323, 478
BsuRI	GGCC	5 cut(s)	200, 226, 387, 398, 434
BtgI	CCRYGG	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	4 cut(s)	343, 367, 376, 394
CviJI	RGCY	8 cut(s)	200, 226, 247, 284, 387, 398, 434, 508
CviKI_1	RGCY	8 cut(s)	200, 226, 247, 284, 387, 398, 434, 508
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	285, 314
DpnI	GATC	6 cut(s)	153, 194, 325, 365, 456, 480
DpnII	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
DriI	GACNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	195, 472
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	346, 370, 379, 397
FaiI	YATR	6 cut(s)	278, 344, 356, 368, 377, 395
FatI	CATG	4 cut(s)	342, 366, 375, 393
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	56, 158, 215
Fsp4HI	GCNGC	3 cut(s)	56, 158, 215
GluI	GCNGC	3 cut(s)	56, 158, 215
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	200, 226, 387, 398, 434
HapII	CCGG	3 cut(s)	222, 227, 511
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	346, 370, 379, 397
HinfI	GANTC	4 cut(s)	60, 252, 258, 268
HpaII	CCGG	3 cut(s)	222, 227, 511
HphI	GGTGA	3 cut(s)	28, 61, 364
Hpy166II	GTNNAC	3 cut(s)	64, 94, 308
Hpy188I	TCNGA	5 cut(s)	47, 190, 251, 257, 315
Hpy188III	TCNNGA	2 cut(s)	272, 511
Hpy8I	GTNNAC	3 cut(s)	64, 94, 308
Hpy99I	CGWCG	5 cut(s)	77, 86, 89, 92, 101
HpyAV	CCTTC	3 cut(s)	37, 157, 400
HpyCH4III	ACNGT	3 cut(s)	339, 542, 579
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 290
HpyF3I	CTNAG	2 cut(s)	285, 314
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	346, 370, 379, 397
Kpn2I	TCCGGA	1 cut(s)	510
Kzo9I	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
LmnI	GCTCC	2 cut(s)	252, 513
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	34, 370
MalI	GATC	6 cut(s)	153, 194, 325, 365, 456, 480
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
MboII	GAAGA	2 cut(s)	113, 187
MflI	RGATCY	3 cut(s)	192, 323, 478
MhlI	GDGCHC	2 cut(s)	19, 362
MluCI	AATT	1 cut(s)	528
MlyI	GAGTC	4 cut(s)	69, 246, 262, 267
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	8 cut(s)	41, 41, 89, 97, 377, 424, 492, 565
MroI	TCCGGA	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	3 cut(s)	222, 227, 511
MspR9I	CCNGG	3 cut(s)	197, 223, 474
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	197, 474
MwoI	GCNNNNNNNGC	2 cut(s)	223, 290
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
NlaIII	CATG	4 cut(s)	346, 370, 379, 397
NmeAIII	GCCGAG	2 cut(s)	226, 424
NmuCI	GTSAC	2 cut(s)	34, 370
PceI	AGGCCT	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	5 cut(s)	81, 87, 93, 96, 105
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	410
PflFI	GACNNNGTC	2 cut(s)	86, 494
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	57, 159, 216
PleI	GAGTC	4 cut(s)	68, 246, 262, 266
PpsI	GAGTC	4 cut(s)	68, 246, 262, 266
Psp6I	CCWGG	2 cut(s)	195, 472
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	195, 472
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	3 cut(s)	192, 323, 478
PsyI	GACNNNGTC	2 cut(s)	86, 494
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	365
SatI	GCNGC	3 cut(s)	56, 158, 215
Sau3AI	GATC	6 cut(s)	151, 192, 323, 363, 454, 478
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	4 cut(s)	69, 246, 262, 267
ScrFI	CCNGG	3 cut(s)	197, 223, 474
SduI	GDGCHC	2 cut(s)	19, 362
SetI	ASST	6 cut(s)	81, 90, 149, 249, 475, 510
SfcI	CTRYAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	528
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	5 cut(s)	39, 55, 155, 158, 214
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	195, 221, 472
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	339, 542, 579
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	81, 150, 173
TasI	AATT	1 cut(s)	528
TauI	GCSGC	3 cut(s)	58, 160, 217
TseFI	GTSAC	2 cut(s)	34, 370
Tsp45I	GTSAC	2 cut(s)	34, 370
TspDTI	ATGAA	3 cut(s)	224, 229, 331
TspGWI	ACGGA	1 cut(s)	280
Tth111I	GACNNNGTC	2 cut(s)	86, 494
Van91I	CCANNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.