Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

48979980 .. 48981647

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCAAACCCCAGAGCACTCTTTTCCTTCCTCGTCACCGTTCTCCTTTTTTTGATTCTGCCCCTCATCTTTTCCCAAAATGGCGGGTACGTCCGGTTCGCCGAGGGAGGAAAGCGGCGAGTCCACATCACCGACGACCTCGACGACGTCGTAGACGACGAAGAGGACGACACTTGGAAAGAATGGGGCAAGAAATCCACACAAACCTTCGATCCGCCGCCGAACGACTTGTCGAAGATGGAGTTATCGGAGATCCAGGCCGAGATGATGAAGCGGCATTCCGGGCCGGTTTTCGGGTTCATCAAGCTCCGACTCGGAGTCAAACGGACTCGGGATATGGTGGCTGAGATTGCTATGAAATGGAGTAAAGTTCTGAGAACTGGATCTATTGGGGTACGGTTCATGGGTGTTGATATGAGCACGATCATGGTCACCATGGAAAGAGGCCAAGACATGACAGAGTTGAAGGAGTTCGTGTTGAGCCAACCAGAGGCCTACGAGATAAAGATTGGAGATCAAGTTTTTCGAAGACCTGGAGATCCTCCTTTAGACCAAGTCGTTGAGAAGCTCCAGAATGAGAGAAAGGGAATCGAGAATGATGGTTCAACAGAGAGCAATAGGCAAGTGAAAGAGGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

213

Amino Acids

24.38

Weight (kDa)

5.17

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	5 cut(s)	84, 115, 215, 218, 274
AclWI	GGATC	4 cut(s)	206, 247, 391, 533
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	89, 396
AfiI	CCNNNNNNNGG	2 cut(s)	293, 490
AgsI	TTSAA	2 cut(s)	466, 606
AhdI	GACNNNNNGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	255, 532
AluBI	AGCT	2 cut(s)	307, 568
AluI	AGCT	2 cut(s)	307, 568
Alw21I	GWGCWC	2 cut(s)	19, 422
AlwI	GGATC	4 cut(s)	206, 247, 391, 533
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	4 cut(s)	258, 284, 445, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	28, 121, 424
AsuII	TTCGAA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	19, 422
BccI	CCATC	2 cut(s)	232, 593
BciT130I	CCWGG	2 cut(s)	257, 534
BcnI	CCSGG	1 cut(s)	283
BisI	GCNGC	3 cut(s)	116, 218, 275
BlsI	GCNGC	3 cut(s)	117, 219, 276
Bme1390I	CCNGG	3 cut(s)	257, 283, 534
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	257, 283, 534
BpiI	GAAGAC	1 cut(s)	535
BpmI	CTGGAG	2 cut(s)	554, 555
Bpu14I	TTCGAA	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	102, 435
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 491, 504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 490
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	257, 534
BseDI	CCNNGG	2 cut(s)	102, 435
BseLI	CCNNNNNNNGG	2 cut(s)	293, 490
BseMII	CTCAG	2 cut(s)	336, 365
BseNI	ACTGG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	260, 286, 447, 494
BsiHKAI	GWGCWC	2 cut(s)	19, 422
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	94, 282, 287
BslI	CCNNNNNNNGG	2 cut(s)	293, 490
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	260, 286, 447, 494
BsoBI	CYCGRG	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	19, 422
Bsp143I	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	5 cut(s)	84, 115, 215, 218, 274
BspANI	GGCC	4 cut(s)	260, 286, 447, 494
BspCNI	CTCAG	2 cut(s)	337, 366
BspPI	GGATC	4 cut(s)	206, 247, 391, 533
BspT104I	TTCGAA	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	102, 435
BssMI	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	257, 534
Bst4CI	ACNGT	2 cut(s)	40, 399
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	345, 374
BstDSI	CCRYGG	1 cut(s)	435
BstEII	GGTNACC	1 cut(s)	430
BstKTI	GATC	6 cut(s)	214, 255, 386, 426, 517, 541
BstMBI	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 350
BstNI	CCWGG	2 cut(s)	257, 534
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	255, 281, 532
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	3 cut(s)	252, 383, 538
BstYI	RGATCY	3 cut(s)	252, 383, 538
BsuRI	GGCC	4 cut(s)	260, 286, 447, 494
BtgI	CCRYGG	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	88, 395
CviAII	CATG	4 cut(s)	403, 427, 436, 454
CviJI	RGCY	8 cut(s)	260, 286, 307, 344, 447, 483, 494, 568
CviKI_1	RGCY	8 cut(s)	260, 286, 307, 344, 447, 483, 494, 568
CviQI	GTAC	2 cut(s)	88, 395
DdeI	CTNAG	2 cut(s)	345, 374
DpnI	GATC	6 cut(s)	213, 254, 385, 425, 516, 540
DpnII	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
DriI	GACNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	255, 532
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	4 cut(s)	406, 430, 439, 457
FaiI	YATR	7 cut(s)	338, 356, 404, 416, 428, 437, 455
FatI	CATG	4 cut(s)	402, 426, 435, 453
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	116, 218, 275
Fsp4HI	GCNGC	3 cut(s)	116, 218, 275
GluI	GCNGC	3 cut(s)	116, 218, 275
GsuI	CTGGAG	2 cut(s)	554, 555
HaeIII	GGCC	4 cut(s)	260, 286, 447, 494
HapII	CCGG	3 cut(s)	94, 282, 287
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	406, 430, 439, 457
HinfI	GANTC	6 cut(s)	55, 120, 312, 318, 328, 588
HpaII	CCGG	3 cut(s)	94, 282, 287
HphI	GGTGA	3 cut(s)	28, 121, 424
Hpy166II	GTNNAC	2 cut(s)	124, 154
Hpy188I	TCNGA	4 cut(s)	250, 311, 317, 375
Hpy188III	TCNNGA	3 cut(s)	332, 571, 592
Hpy8I	GTNNAC	2 cut(s)	124, 154
Hpy99I	CGWCG	5 cut(s)	137, 146, 149, 152, 161
HpyAV	CCTTC	3 cut(s)	37, 217, 460
HpyCH4III	ACNGT	2 cut(s)	40, 399
HpyCH4IV	ACGT	2 cut(s)	90, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 350
HpyF3I	CTNAG	2 cut(s)	345, 374
HpySE526I	ACGT	2 cut(s)	90, 147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	406, 430, 439, 457
Kzo9I	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
LmnI	GCTCC	2 cut(s)	312, 573
MaeII	ACGT	2 cut(s)	90, 147
MaeIII	GTNAC	2 cut(s)	34, 430
MalI	GATC	6 cut(s)	213, 254, 385, 425, 516, 540
MboI	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
MboII	GAAGA	3 cut(s)	173, 247, 540
MflI	RGATCY	3 cut(s)	252, 383, 538
MhlI	GDGCHC	2 cut(s)	19, 422
MluCI	AATT	1 cut(s)	635
MlyI	GAGTC	4 cut(s)	129, 306, 322, 327
MmeI	TCCRAC	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	3 cut(s)	94, 282, 287
MspR9I	CCNGG	3 cut(s)	257, 283, 534
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	257, 534
MwoI	GCNNNNNNNGC	2 cut(s)	283, 350
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
NlaIII	CATG	4 cut(s)	406, 430, 439, 457
NmeAIII	GCCGAG	2 cut(s)	127, 286
NmuCI	GTSAC	2 cut(s)	34, 430
NspV	TTCGAA	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	5 cut(s)	141, 147, 153, 156, 165
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	55, 588
PflFI	GACNNNGTC	2 cut(s)	146, 554
PkrI	GCNGC	3 cut(s)	117, 219, 276
PleI	GAGTC	4 cut(s)	128, 306, 322, 326
PpsI	GAGTC	4 cut(s)	128, 306, 322, 326
Psp6I	CCWGG	2 cut(s)	255, 532
PspEI	GGTNACC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	255, 532
PspPI	GGNCC	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PsuI	RGATCY	3 cut(s)	252, 383, 538
PsyI	GACNNNGTC	2 cut(s)	146, 554
RsaI	GTAC	2 cut(s)	89, 396
RsaNI	GTAC	2 cut(s)	88, 395
RseI	CAYNNNNRTG	1 cut(s)	425
SatI	GCNGC	3 cut(s)	116, 218, 275
Sau3AI	GATC	6 cut(s)	211, 252, 383, 423, 514, 538
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	4 cut(s)	129, 306, 322, 327
ScrFI	CCNGG	3 cut(s)	257, 283, 534
SduI	GDGCHC	2 cut(s)	19, 422
SetI	ASST	7 cut(s)	93, 141, 150, 209, 309, 535, 570
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	635
SseBI	AGGCCT	1 cut(s)	494
SsiI	CCGC	5 cut(s)	84, 115, 215, 218, 274
StuI	AGGCCT	1 cut(s)	494
StyD4I	CCNGG	3 cut(s)	255, 281, 532
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	40, 399
TaiI	ACGT	2 cut(s)	93, 150
TaqI	TCGA	5 cut(s)	141, 210, 233, 526, 591
TasI	AATT	1 cut(s)	635
TauI	GCSGC	3 cut(s)	118, 220, 277
TfiI	GAWTC	2 cut(s)	55, 588
TseFI	GTSAC	2 cut(s)	34, 430
Tsp45I	GTSAC	2 cut(s)	34, 430
TspDTI	ATGAA	4 cut(s)	284, 289, 371, 391
TspGWI	ACGGA	1 cut(s)	340
Tth111I	GACNNNGTC	2 cut(s)	146, 554
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	470
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.