Rh1BG231400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007895
Physical Location & Seq
Reverse (-)
35365953 .. 35367947
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG231400.1

Sequence Viewer

Length: 468 bp
ATGTCAAACCCCAGAGCACCCTTTTCCTTCCTCGTCGCTGTTCTCGTTTTCTTTATTCTACCCCTCATCTTTTCCCAAAATGGCGGGTACATCCGGTTCGCCGAGGGAGGAAAGCGGCGAGTCCACATCACCGACGACCTCGACGACGTCGTAGACGACGAAGAGGACGATACGTGGAAAGAATGGGGCAAGAAATCCACACAAACCTTCGATCCGCCGCCGAACGACTTGTCGAAGATGGAGTTATCGGAGATCCAGGCTGAGATGATGAAGCGGCATTCCGGGCCGGTTTTCGGGTTCATCAAGCTCCGACTCGGCGTCAAACGGACTCGGGATATGGTGGCTGAGATTGCTATGAAATGGAGTAAAGTTCTGAGAACTGGATCTATTGGGGTACGGTTCATGGGTGTTGATATGAGCACGATCATGGTCACCATGGAAAGAGGCCAAGACATGACAGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mesd

Protein Analysis

155

Amino Acids

17.68

Weight (kDa)

5.73

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 153
AciI CCGC 5 cut(s) 84, 115, 215, 218, 274
AclWI GGATC 3 cut(s) 206, 247, 391
AcyI GRCGYC 2 cut(s) 147, 318
AfaI GTAC 2 cut(s) 89, 396
AfiI CCNNNNNNNGG 1 cut(s) 293
AhdI GACNNNNNGTC 1 cut(s) 317
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 19, 422
AlwI GGATC 3 cut(s) 206, 247, 391
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 2 cut(s) 284, 445
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 121, 424
AvaI CYCGRG 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 19, 422
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 283
BisI GCNGC 3 cut(s) 116, 218, 275
BlsI GCNGC 3 cut(s) 117, 219, 276
Bme1390I CCNGG 2 cut(s) 257, 283
BmeRI GACNNNNNGTC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 257, 283
BpuMI CCSGG 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 174
BsaHI GRCGYC 2 cut(s) 147, 318
BsaJI CCNNGG 2 cut(s) 102, 435
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 102, 435
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 252, 336, 365
BseNI ACTGG 1 cut(s) 385
BshFI GGCC 2 cut(s) 286, 447
BsiHKAI GWGCWC 2 cut(s) 19, 422
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 94, 282, 287
BslI CCNNNNNNNGG 1 cut(s) 293
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 286, 447
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 19, 422
Bsp143I GATC 4 cut(s) 211, 252, 383, 423
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 5 cut(s) 84, 115, 215, 218, 274
BspANI GGCC 2 cut(s) 286, 447
BspCNI CTCAG 3 cut(s) 253, 337, 366
BspPI GGATC 3 cut(s) 206, 247, 391
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 102, 435
BssMI GATC 4 cut(s) 211, 252, 383, 423
BssNI GRCGYC 2 cut(s) 147, 318
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 147, 318
BstBAI YACGTR 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 261, 345, 374
BstDSI CCRYGG 1 cut(s) 435
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 4 cut(s) 214, 255, 386, 426
BstMBI GATC 4 cut(s) 211, 252, 383, 423
BstMWI GCNNNNNNNGC 2 cut(s) 283, 350
BstNI CCWGG 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 255, 281
BstX2I RGATCY 2 cut(s) 252, 383
BstYI RGATCY 2 cut(s) 252, 383
BsuRI GGCC 2 cut(s) 286, 447
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 88, 395
CviAII CATG 4 cut(s) 403, 427, 436, 454
CviJI RGCY 5 cut(s) 260, 286, 307, 344, 447
CviKI_1 RGCY 5 cut(s) 260, 286, 307, 344, 447
CviQI GTAC 2 cut(s) 88, 395
DdeI CTNAG 3 cut(s) 261, 345, 374
DpnI GATC 4 cut(s) 213, 254, 385, 425
DpnII GATC 4 cut(s) 211, 252, 383, 423
DriI GACNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 156
Eam1105I GACNNNNNGTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 4 cut(s) 406, 430, 439, 457
FaiI YATR 8 cut(s) 338, 356, 404, 416, 428, 437, 455, 466
FatI CATG 4 cut(s) 402, 426, 435, 453
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 116, 218, 275
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 116, 218, 275
GluI GCNGC 3 cut(s) 116, 218, 275
HaeIII GGCC 2 cut(s) 286, 447
HapII CCGG 3 cut(s) 94, 282, 287
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 147, 318
Hin1II CATG 4 cut(s) 406, 430, 439, 457
HinfI GANTC 3 cut(s) 120, 312, 328
HpaII CCGG 3 cut(s) 94, 282, 287
HphI GGTGA 2 cut(s) 121, 424
Hpy166II GTNNAC 2 cut(s) 124, 154
Hpy188I TCNGA 3 cut(s) 250, 311, 375
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 124, 154
Hpy99I CGWCG 6 cut(s) 38, 137, 146, 149, 152, 161
HpyAV CCTTC 2 cut(s) 37, 217
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4IV ACGT 2 cut(s) 147, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 350
HpyF3I CTNAG 3 cut(s) 261, 345, 374
HpySE526I ACGT 2 cut(s) 147, 173
Hsp92I GRCGYC 2 cut(s) 147, 318
Hsp92II CATG 4 cut(s) 406, 430, 439, 457
Kzo9I GATC 4 cut(s) 211, 252, 383, 423
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 7 cut(s) 25, 107, 242, 269, 295, 300, 366
MaeII ACGT 2 cut(s) 147, 173
MaeIII GTNAC 1 cut(s) 430
MalI GATC 4 cut(s) 213, 254, 385, 425
MboI GATC 4 cut(s) 211, 252, 383, 423
MboII GAAGA 2 cut(s) 173, 247
MflI RGATCY 2 cut(s) 252, 383
MhlI GDGCHC 2 cut(s) 19, 422
MlyI GAGTC 3 cut(s) 129, 306, 322
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 41, 74, 97, 101, 149, 157, 437, 454
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 3 cut(s) 94, 282, 287
MspR9I CCNGG 2 cut(s) 257, 283
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 283, 350
NciI CCSGG 1 cut(s) 283
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 211, 252, 383, 423
NlaIII CATG 4 cut(s) 406, 430, 439, 457
NmeAIII GCCGAG 2 cut(s) 127, 294
NmuCI GTSAC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 6 cut(s) 42, 141, 147, 153, 156, 165
PctI GAATGC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 117, 219, 276
PleI GAGTC 3 cut(s) 128, 306, 322
PpsI GAGTC 3 cut(s) 128, 306, 322
Ppu21I YACGTR 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 255
PspPI GGNCC 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PsuI RGATCY 2 cut(s) 252, 383
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 89, 396
RsaNI GTAC 2 cut(s) 88, 395
RseI CAYNNNNRTG 1 cut(s) 425
SatI GCNGC 3 cut(s) 116, 218, 275
Sau3AI GATC 4 cut(s) 211, 252, 383, 423
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 3 cut(s) 129, 306, 322
ScrFI CCNGG 2 cut(s) 257, 283
SduI GDGCHC 2 cut(s) 19, 422
SetI ASST 6 cut(s) 141, 150, 176, 209, 309, 465
SmiMI CAYNNNNRTG 1 cut(s) 425
SsiI CCGC 5 cut(s) 84, 115, 215, 218, 274
StyD4I CCNGG 2 cut(s) 255, 281
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 399
TaiI ACGT 2 cut(s) 150, 176
TaqI TCGA 3 cut(s) 141, 210, 233
TauI GCSGC 3 cut(s) 118, 220, 277
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 284, 289, 371, 391
TspGWI ACGGA 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 153
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.