Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

21907607 .. 21910052

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G172500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCAAACCCAAAACCACCATTTCCCTTTCTCTTCGCCATTCTCTTCTTCTTCATTCTACCCCTTTTCTTTTCCCAAAATGGCGAGTATGTCCGGTTCGCCGAGGCAGGAAAGCGGAGAGTCCACATCACTGACGACCTGGACGACGTCGTAGACGACGAAGAGGACGATACTTGGAAAGAATGGGGCAAGAAATCCACACCCTCTTCCGATTTCGATCCGCCCCCTGATTTATCCAAAATGGACATGTCCGAGATCCAGGCTGAGATGATGAAGCGGCATATCGGCCCCGCTTTCGGGTTTGTGAAGCTCCGGCTGGGCGTCAAACGGACTCGGGATACGGTGGCTGAGATTGCTATGAAATGGACCAAAGTTCTGAGAACTGGAGCTCTTGGGGTAAGATTCATGGGTGTTGATCTAAGCACAATCATGTTCAACATGGAACAAGGCCAAGACATGACAGAGTTGAAGGAGTTTGTGTGGAACCAACCAGAGGCCTATGAAATAAAGATTGGCGAACAAGTGTTTCGAAGACCTGGAGATCCTCCATTGGAGGAAGTTGTGGAGAAGCTCCAGAACGAGAAAAAGAGAGTGGAGAATGAGAGTCCAGCAGAGAGCAATATGCATTTGAAAGAGGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

215

Amino Acids

24.82

Weight (kDa)

4.96

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	4 cut(s)	115, 221, 277, 291
AclWI	GGATC	3 cut(s)	212, 250, 536
AcyI	GRCGYC	2 cut(s)	147, 321
AfiI	CCNNNNNNNGG	3 cut(s)	296, 297, 493
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	436, 469, 631
AjnI	CCWGG	3 cut(s)	138, 258, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	3 cut(s)	310, 389, 571
AluI	AGCT	3 cut(s)	310, 389, 571
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	212, 250, 536
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	3 cut(s)	286, 448, 495
AspS9I	GGNCC	2 cut(s)	287, 366
AsuII	TTCGAA	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	391
BciT130I	CCWGG	3 cut(s)	140, 260, 537
BciVI	GTATCC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	3 cut(s)	140, 260, 537
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	287, 366
BmiI	GGNNCC	2 cut(s)	289, 485
BmrFI	CCNGG	3 cut(s)	140, 260, 537
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	3 cut(s)	405, 557, 558
Bpu14I	TTCGAA	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	147, 321
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 297, 493
Bse1I	ACTGG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	140, 260, 537
BseDI	CCNNGG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	296, 297, 493
BseMII	CTCAG	3 cut(s)	255, 339, 368
BseNI	ACTGG	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	3 cut(s)	288, 450, 497
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	94, 313
BslI	CCNNNNNNNGG	3 cut(s)	296, 297, 493
BsnI	GGCC	3 cut(s)	288, 450, 497
BsoBI	CYCGRG	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	217, 255, 415, 541
BspACI	CCGC	4 cut(s)	115, 221, 277, 291
BspANI	GGCC	3 cut(s)	288, 450, 497
BspCNI	CTCAG	3 cut(s)	256, 340, 369
BspLI	GGNNCC	2 cut(s)	289, 485
BspPI	GGATC	3 cut(s)	212, 250, 536
BspT104I	TTCGAA	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	217, 255, 415, 541
BssNI	GRCGYC	2 cut(s)	147, 321
Bst2UI	CCWGG	3 cut(s)	140, 260, 537
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	4 cut(s)	38, 50, 156, 211
BstACI	GRCGYC	2 cut(s)	147, 321
BstBI	TTCGAA	1 cut(s)	529
BstDEI	CTNAG	4 cut(s)	264, 348, 377, 419
BstKTI	GATC	4 cut(s)	220, 258, 418, 544
BstMBI	GATC	4 cut(s)	217, 255, 415, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	3 cut(s)	140, 260, 537
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	138, 258, 535
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	255, 541
BstYI	RGATCY	2 cut(s)	255, 541
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	288, 450, 497
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	287, 366
CseI	GACGC	1 cut(s)	310
CviAII	CATG	5 cut(s)	247, 406, 430, 439, 457
CviJI	RGCY	9 cut(s)	263, 288, 310, 316, 347, 389, 450, 497, 571
CviKI_1	RGCY	9 cut(s)	263, 288, 310, 316, 347, 389, 450, 497, 571
DdeI	CTNAG	4 cut(s)	264, 348, 377, 419
DpnI	GATC	4 cut(s)	219, 257, 417, 543
DpnII	GATC	4 cut(s)	217, 255, 415, 541
Eam1104I	CTCTTC	4 cut(s)	38, 50, 156, 211
EarI	CTCTTC	4 cut(s)	38, 50, 156, 211
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	389
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	138, 258, 535
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	5 cut(s)	250, 409, 433, 442, 460
FatI	CATG	5 cut(s)	246, 405, 429, 438, 456
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	3 cut(s)	405, 557, 558
HaeIII	GGCC	3 cut(s)	288, 450, 497
HapII	CCGG	2 cut(s)	94, 313
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	2 cut(s)	147, 321
Hin1II	CATG	5 cut(s)	250, 409, 433, 442, 460
HinfI	GANTC	4 cut(s)	120, 331, 402, 604
HpaII	CCGG	2 cut(s)	94, 313
Hpy166II	GTNNAC	2 cut(s)	124, 154
Hpy188I	TCNGA	3 cut(s)	211, 253, 378
Hpy188III	TCNNGA	2 cut(s)	335, 574
Hpy8I	GTNNAC	2 cut(s)	124, 154
Hpy99I	CGWCG	3 cut(s)	149, 152, 161
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	4 cut(s)	264, 348, 377, 419
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	147, 321
Hsp92II	CATG	5 cut(s)	250, 409, 433, 442, 460
Kzo9I	GATC	4 cut(s)	217, 255, 415, 541
LmnI	GCTCC	3 cut(s)	315, 386, 576
MaeII	ACGT	1 cut(s)	147
MalI	GATC	4 cut(s)	219, 257, 417, 543
MboI	GATC	4 cut(s)	217, 255, 415, 541
MboII	GAAGA	7 cut(s)	25, 37, 40, 43, 173, 198, 543
MflI	RGATCY	2 cut(s)	255, 541
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	638
MlyI	GAGTC	3 cut(s)	129, 325, 613
MnlI	CCTC	7 cut(s)	97, 157, 214, 487, 547, 555, 628
Mph1103I	ATGCAT	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	2 cut(s)	94, 313
MspR9I	CCNGG	3 cut(s)	140, 260, 537
MvaI	CCWGG	3 cut(s)	140, 260, 537
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	4 cut(s)	217, 255, 415, 541
NlaIII	CATG	5 cut(s)	250, 409, 433, 442, 460
NlaIV	GGNNCC	2 cut(s)	289, 485
NmeAIII	GCCGAG	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	497
PciI	ACATGT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 153, 156, 165
PfeI	GAWTC	1 cut(s)	402
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	3 cut(s)	128, 325, 612
PpsI	GAGTC	3 cut(s)	128, 325, 612
PscI	ACATGT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	3 cut(s)	138, 258, 535
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	138, 258, 535
PspN4I	GGNNCC	2 cut(s)	289, 485
PspPI	GGNCC	2 cut(s)	287, 366
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PsuI	RGATCY	2 cut(s)	255, 541
PsyI	GACNNNGTC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	391
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	4 cut(s)	217, 255, 415, 541
Sau96I	GGNCC	2 cut(s)	287, 366
SchI	GAGTC	3 cut(s)	129, 325, 613
ScrFI	CCNGG	3 cut(s)	140, 260, 537
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	6 cut(s)	141, 150, 312, 391, 538, 573
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	638
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	4 cut(s)	115, 221, 277, 291
SstI	GAGCTC	1 cut(s)	391
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	138, 258, 535
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	216, 529
TasI	AATT	1 cut(s)	638
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	402
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	43, 287, 374, 394, 516
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	366
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.