Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

12896990 .. 12899132

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCATTCCCAACAGCACCCTCTCCCTTCCTCGTCGCCCTTCTCGTTTTCTTCATTCTTCCCCTCGTCTTCTCCCCAAACGGCGGGTACGTTCGTCTCGCCGAGGGAGGAAAGGGTCGAGTGCACATCACCGACGAGCTCGACGACGTCGTAGACGACGAAGAGGACGACACTTGGAAAGAATGGGGCAAGAAGCCCACACCCCAGTTCGATCTGCCGCCGGAGAAGTTGGAGAAGATGGAGTTGTCGGAGATCCAGGCCGAGACTTTGAAGAGGCATTCCGGGCCGATTCTTGGGTTCATCAAGCTCCGACTCGGCGTCAAACGGACTAAGGATATGGTGGTTGAGATTGCTACAAGATGGAGTAAAGTTCTGAGAACTGGATCTATTGCGGTGAAGTTCATGGGTATTGATTTAAGCACGGTCATGGTCACCATTGAAAGAGGCCAAGACTTGAACGAGTTGAAGGATTTCGTGTTGAACCAACCGGAGGCTTACGAGCTAAAGATTGGAGACCAATATTTTCGAAGGCCTGGAGATCCTCCTTTAGAGGAAGTTGTTGAGATGCTCCAGAATGAGAAAATGAGAAAGGAGAATGATGGTTCAACAGAGAGCAATAAGCAAGTGAAAGAGGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

214

Amino Acids

24.26

Weight (kDa)

4.95

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	84, 218, 392
AclWI	GGATC	3 cut(s)	247, 391, 533
AcyI	GRCGYC	2 cut(s)	147, 318
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	83, 293, 490
AgsI	TTSAA	6 cut(s)	271, 440, 457, 466, 481, 606
AhdI	GACNNNNNGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	255, 532
AluBI	AGCT	3 cut(s)	139, 307, 502
AluI	AGCT	3 cut(s)	139, 307, 502
Alw21I	GWGCWC	2 cut(s)	126, 141
Alw26I	GTCTC	3 cut(s)	101, 257, 507
Alw44I	GTGCAC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	247, 391, 533
AoxI	GGCC	4 cut(s)	258, 284, 445, 530
ApaLI	GTGCAC	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	121, 406, 424
AsuII	TTCGAA	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	126
BaeI	ACNNNNGTAYC	2 cut(s)	79, 112
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	126, 141
BccI	CCATC	3 cut(s)	232, 354, 593
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	257, 534
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	101, 257, 507
BfmI	CTRYAG	1 cut(s)	638
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	257, 283, 534
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	257, 283, 534
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	554, 555
Bpu14I	TTCGAA	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	2 cut(s)	147, 318
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 293, 490
Bse1I	ACTGG	2 cut(s)	205, 385
BseBI	CCWGG	2 cut(s)	257, 534
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	83, 293, 490
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	205, 385
BseSI	GKGCMC	1 cut(s)	126
BshFI	GGCC	4 cut(s)	260, 286, 447, 532
BsiHKAI	GWGCWC	2 cut(s)	126, 141
BsiSI	CCGG	3 cut(s)	221, 282, 488
BslI	CCNNNNNNNGG	3 cut(s)	83, 293, 490
BsmAI	GTCTC	3 cut(s)	101, 257, 507
BsmBI	CGTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	260, 286, 447, 532
Bso31I	GGTCTC	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	126, 141
Bsp143I	GATC	4 cut(s)	211, 252, 383, 538
BspACI	CCGC	3 cut(s)	84, 218, 392
BspANI	GGCC	4 cut(s)	260, 286, 447, 532
BspCNI	CTCAG	1 cut(s)	366
BspPI	GGATC	3 cut(s)	247, 391, 533
BspT104I	TTCGAA	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	205, 385
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	211, 252, 383, 538
BssNI	GRCGYC	2 cut(s)	147, 318
Bst2UI	CCWGG	2 cut(s)	257, 534
Bst4CI	ACNGT	2 cut(s)	424, 639
Bst6I	CTCTTC	2 cut(s)	156, 266
BstACI	GRCGYC	2 cut(s)	147, 318
BstBI	TTCGAA	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	330, 374
BstEII	GGTNACC	1 cut(s)	430
BstKTI	GATC	4 cut(s)	214, 255, 386, 541
BstMAI	GTCTC	3 cut(s)	101, 257, 507
BstMBI	GATC	4 cut(s)	211, 252, 383, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	257, 534
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	255, 281, 532
BstSFI	CTRYAG	1 cut(s)	638
BstSLI	GKGCMC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	3 cut(s)	252, 383, 538
BstYI	RGATCY	3 cut(s)	252, 383, 538
BsuRI	GGCC	4 cut(s)	260, 286, 447, 532
Cfr13I	GGNCC	1 cut(s)	284
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	403, 427
CviJI	RGCY	9 cut(s)	139, 196, 260, 286, 307, 447, 494, 502, 532
CviKI_1	RGCY	9 cut(s)	139, 196, 260, 286, 307, 447, 494, 502, 532
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	330, 374
DpnI	GATC	4 cut(s)	213, 254, 385, 540
DpnII	GATC	4 cut(s)	211, 252, 383, 538
DriI	GACNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	156, 266
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EarI	CTCTTC	2 cut(s)	156, 266
Ecl136II	GAGCTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	255, 532
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	406, 430
FaiI	YATR	3 cut(s)	338, 404, 428
FatI	CATG	2 cut(s)	402, 426
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	554, 555
HaeIII	GGCC	4 cut(s)	260, 286, 447, 532
HapII	CCGG	3 cut(s)	221, 282, 488
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	2 cut(s)	147, 318
Hin1II	CATG	2 cut(s)	406, 430
HinfI	GANTC	2 cut(s)	289, 312
HpaII	CCGG	3 cut(s)	221, 282, 488
HphI	GGTGA	3 cut(s)	121, 406, 424
Hpy166II	GTNNAC	2 cut(s)	124, 154
Hpy188I	TCNGA	3 cut(s)	250, 311, 375
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	2 cut(s)	124, 154
Hpy99I	CGWCG	6 cut(s)	38, 137, 146, 149, 152, 161
HpyAV	CCTTC	4 cut(s)	37, 50, 460, 522
HpyCH4III	ACNGT	2 cut(s)	424, 639
HpyCH4IV	ACGT	2 cut(s)	90, 147
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	330, 374
HpySE526I	ACGT	2 cut(s)	90, 147
Hsp92I	GRCGYC	2 cut(s)	147, 318
Hsp92II	CATG	2 cut(s)	406, 430
Kzo9I	GATC	4 cut(s)	211, 252, 383, 538
LmnI	GCTCC	2 cut(s)	312, 573
LweI	GCATC	1 cut(s)	555
MaeII	ACGT	2 cut(s)	90, 147
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	4 cut(s)	213, 254, 385, 540
MboI	GATC	4 cut(s)	211, 252, 383, 538
MboII	GAAGA	6 cut(s)	43, 50, 61, 173, 247, 283
MflI	RGATCY	3 cut(s)	252, 383, 538
MhlI	GDGCHC	2 cut(s)	126, 141
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	3 cut(s)	210, 228, 334
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	3 cut(s)	221, 282, 488
MspR9I	CCNGG	3 cut(s)	257, 283, 534
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	257, 534
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	211, 252, 383, 538
NlaIII	CATG	2 cut(s)	406, 430
NmeAIII	GCCGAG	3 cut(s)	127, 286, 294
NmuCI	GTSAC	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	7 cut(s)	42, 87, 141, 147, 153, 156, 165
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	255, 532
PspEI	GGTNACC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	255, 532
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	3 cut(s)	252, 383, 538
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	4 cut(s)	211, 252, 383, 538
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	3 cut(s)	257, 283, 534
SduI	GDGCHC	2 cut(s)	126, 141
SetI	ASST	5 cut(s)	93, 141, 150, 309, 504
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	638
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	425
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	3 cut(s)	84, 218, 392
SspI	AATATT	1 cut(s)	521
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	255, 281, 532
TaaI	ACNGT	2 cut(s)	424, 639
TaiI	ACGT	2 cut(s)	93, 150
TaqI	TCGA	4 cut(s)	118, 141, 210, 526
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	43, 289, 391
TspGWI	ACGGA	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	470
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.