Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Reverse (-)

50818534 .. 50819520

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG246300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGTTATCGGAGATCCAGGCCGAGATGATGAAGCGGCATTCCGGGCCGGTTTTCGGGTTCATCAAGCTCCGACTCGGAGTCAAACGGACTCGGGATATGGTGGCTGAGATTGCTACGAAATGGAGTAAACTTCTGAGAACTGGATCTATTGGGGTACGGTTCATGGGTGTTGATATGAGCACGATCATGGTCACCATGGAAAGAGGCCAAGACATGGCCGAGTTGAAGGAGTTCGTGTTGAACCAACCAGAGGCCTACGAGATAAAGATTGGAGATCAAGTTTTTCAAAGACCTGGAGATCCTCCTTTAGACCAAGTCGTTGAGAAGCTCCGGAATGAGAGAACGAGAATTGAGAATGACGGTTCAACAGAGAGCAATAGGCAAGTGAAAGAGGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

134

Amino Acids

15.4

Weight (kDa)

5.94

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	3 cut(s)	10, 154, 296
AcoI	YGGCCR	1 cut(s)	219
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	56, 217, 253
AgsI	TTSAA	4 cut(s)	229, 244, 290, 369
AhdI	GACNNNNNGTC	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	18, 295
AluBI	AGCT	2 cut(s)	70, 331
AluI	AGCT	2 cut(s)	70, 331
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	10, 154, 296
Ama87I	CYCGRG	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	5 cut(s)	21, 47, 208, 219, 255
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	20, 297
BcnI	CCSGG	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	401
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	3 cut(s)	20, 46, 297
BmeRI	GACNNNNNGTC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	3 cut(s)	20, 46, 297
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 217, 253
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	20, 297
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	56, 217, 253
BseMII	CTCAG	2 cut(s)	99, 128
BseNI	ACTGG	1 cut(s)	148
BshFI	GGCC	5 cut(s)	23, 49, 210, 221, 257
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	45, 50, 334
BslI	CCNNNNNNNGG	3 cut(s)	56, 217, 253
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	5 cut(s)	23, 49, 210, 221, 257
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	15, 146, 186, 277, 301
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	5 cut(s)	23, 49, 210, 221, 257
BspCNI	CTCAG	2 cut(s)	100, 129
BspEI	TCCGGA	1 cut(s)	333
BspPI	GGATC	3 cut(s)	10, 154, 296
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	15, 146, 186, 277, 301
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	20, 297
Bst4CI	ACNGT	3 cut(s)	162, 365, 402
BstDEI	CTNAG	2 cut(s)	108, 137
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	193
BstKTI	GATC	5 cut(s)	18, 149, 189, 280, 304
BstMBI	GATC	5 cut(s)	15, 146, 186, 277, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 113
BstNI	CCWGG	2 cut(s)	20, 297
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	18, 44, 295
BstSFI	CTRYAG	1 cut(s)	401
BstX2I	RGATCY	3 cut(s)	15, 146, 301
BstYI	RGATCY	3 cut(s)	15, 146, 301
BsuRI	GGCC	5 cut(s)	23, 49, 210, 221, 257
BtgI	CCRYGG	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	4 cut(s)	166, 190, 199, 217
CviJI	RGCY	8 cut(s)	23, 49, 70, 107, 210, 221, 257, 331
CviKI_1	RGCY	8 cut(s)	23, 49, 70, 107, 210, 221, 257, 331
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	108, 137
DpnI	GATC	5 cut(s)	17, 148, 188, 279, 303
DpnII	GATC	5 cut(s)	15, 146, 186, 277, 301
DriI	GACNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	18, 295
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	4 cut(s)	169, 193, 202, 220
FaiI	YATR	6 cut(s)	101, 167, 179, 191, 200, 218
FatI	CATG	4 cut(s)	165, 189, 198, 216
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	23, 49, 210, 221, 257
HapII	CCGG	3 cut(s)	45, 50, 334
Hin1II	CATG	4 cut(s)	169, 193, 202, 220
HinfI	GANTC	3 cut(s)	75, 81, 91
HpaII	CCGG	3 cut(s)	45, 50, 334
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	13, 74, 80, 138
Hpy188III	TCNNGA	2 cut(s)	95, 334
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	162, 365, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 113
HpyF3I	CTNAG	2 cut(s)	108, 137
Hsp92II	CATG	4 cut(s)	169, 193, 202, 220
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	15, 146, 186, 277, 301
LmnI	GCTCC	2 cut(s)	75, 336
LpnPI	CCDG	9 cut(s)	5, 32, 58, 63, 129, 264, 282, 309, 347
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	5 cut(s)	17, 148, 188, 279, 303
MboI	GATC	5 cut(s)	15, 146, 186, 277, 301
MflI	RGATCY	3 cut(s)	15, 146, 301
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	69, 85, 90
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	200, 247, 315, 388
MroI	TCCGGA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	3 cut(s)	45, 50, 334
MspR9I	CCNGG	3 cut(s)	20, 46, 297
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	20, 297
MwoI	GCNNNNNNNGC	2 cut(s)	46, 113
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	5 cut(s)	15, 146, 186, 277, 301
NlaIII	CATG	4 cut(s)	169, 193, 202, 220
NmeAIII	GCCGAG	2 cut(s)	49, 247
NmuCI	GTSAC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	3 cut(s)	69, 85, 89
PpsI	GAGTC	3 cut(s)	69, 85, 89
Psp6I	CCWGG	2 cut(s)	18, 295
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	18, 295
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	3 cut(s)	15, 146, 301
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	188
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	5 cut(s)	15, 146, 186, 277, 301
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	3 cut(s)	69, 85, 90
ScrFI	CCNGG	3 cut(s)	20, 46, 297
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	3 cut(s)	72, 298, 333
SfcI	CTRYAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	351
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	18, 44, 295
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	162, 365, 402
TasI	AATT	1 cut(s)	351
TauI	GCSGC	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	47, 52, 154
TspGWI	ACGGA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.