Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007895

Physical Location & Seq

Genomic Coordinates Forward (+)

14848881 .. 14849718

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAAACCCGACACCTCCAGTCCCCATTATCCTCGCCCTTCTCCTCCTCCTCATTCTACCCTTCATCTTTTCCTCAAATGGCGAATTCGTCCGGTTCGCCGAGGCGGGAAAGAGGACGACACCTGGAAAGAATGGCAAAGTTGATAAGTGCTTCTTTTCCCCCTCCCAGGATACGGTGGCTGAGCTTGCTATGAAATGGACTCAAGTTCTGAGGACCGGAGCGATTGGGGCAAGGTTCATGGGTGTTGATCTAAACACGATCATGTTCACCATGGAAAGGGGCCAAGACACGACAGAGTTGAAGGATTTTGCATTGAACCAACCAGAGGCCTATGAGATAAAGATTGGCGATCAAATTTTTCGGAGACCTGGAGATCCTCCTTTAGAGGAACTCGTTGAGAAGCTCCAGAATGAGAAAAAGAGAAAGGAGAGTGATAGTCCACCAGAGAGCGATACACATTCGAAGGAGGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mesd

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

5.16

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46000
fragaria_vesca	FvH4_7g14630
malus_domestica	MD01G1065300.v1.1 MD07G1135200.v1.1
prunus_persica	Prupe.2G172500_v2.0.a1 Prupe.2G172500_v2.0.a1
pyrus_communis	pycom01g09460 pycom07g13230
rosa_chinensis	RchiOBHm_Chr1g0356151 RchiOBHm_Chr1g0356451
rosa_laevigata	RLG00000028096 RLG00000028101
rosa_multiflora	Rmu_sc0003229.1_g000001 Rmu_sc0014206.1_g000011 Rmu_sc0014660.1_g000007
rosa_roxburghii	Rroxscaffold_4G00299520 Rroxscaffold_4G00299740
rosa_rugosa	Rorug01G0249700
rosa_samantha	Rh1AG262700 Rh1AG263500 Rh1BG231400 Rh1CG246300 Rh1DG259100
rosa_wichuraiana	Rw1G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	86, 357
AfiI	CCNNNNNNNGG	4 cut(s)	169, 175, 279, 328
AgsI	TTSAA	2 cut(s)	304, 319
AjnI	CCWGG	3 cut(s)	124, 168, 370
AluBI	AGCT	2 cut(s)	187, 406
AluI	AGCT	2 cut(s)	187, 406
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	283, 330
ApoI	RAATTY	2 cut(s)	86, 357
AspS9I	GGNCC	2 cut(s)	216, 283
AsuHPI	GGTGA	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	216
BciT130I	CCWGG	3 cut(s)	126, 170, 372
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	166
BlpI	GCTNAGC	1 cut(s)	183
Bme1390I	CCNGG	3 cut(s)	126, 170, 372
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	216, 283
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	126, 170, 372
BpmI	CTGGAG	2 cut(s)	392, 393
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	102, 168, 273
BsaWI	WCCGGW	2 cut(s)	93, 218
BsaXI	ACNNNNNCTCC	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 175, 279, 328
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	3 cut(s)	126, 170, 372
BseDI	CCNNGG	3 cut(s)	102, 168, 273
BseLI	CCNNNNNNNGG	4 cut(s)	169, 175, 279, 328
BseMII	CTCAG	2 cut(s)	174, 203
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	35, 38, 41
BshFI	GGCC	2 cut(s)	285, 332
BsiSI	CCGG	2 cut(s)	94, 219
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	4 cut(s)	169, 175, 279, 328
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	285, 332
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	464
Bsp143I	GATC	4 cut(s)	250, 261, 352, 376
Bsp1720I	GCTNAGC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	285, 332
BspCNI	CTCAG	2 cut(s)	175, 204
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	102, 168, 273
BssMI	GATC	4 cut(s)	250, 261, 352, 376
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	3 cut(s)	126, 170, 372
Bst4CI	ACNGT	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	183, 212
BstDSI	CCRYGG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	253, 264, 355, 379
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	4 cut(s)	250, 261, 352, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 230
BstNI	CCWGG	3 cut(s)	126, 170, 372
BstSCI	CCNGG	3 cut(s)	124, 168, 370
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	285, 332
BtgI	CCRYGG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	216, 283
CviAII	CATG	3 cut(s)	241, 265, 274
CviJI	RGCY	5 cut(s)	182, 187, 285, 332, 406
CviKI_1	RGCY	5 cut(s)	182, 187, 285, 332, 406
DdeI	CTNAG	2 cut(s)	183, 212
DpnI	GATC	4 cut(s)	252, 263, 354, 378
DpnII	GATC	4 cut(s)	250, 261, 352, 376
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	124, 168, 370
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	244, 268, 277
FaiI	YATR	5 cut(s)	194, 242, 266, 275, 336
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	3 cut(s)	240, 264, 273
FauI	CCCGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	392, 393
HaeIII	GGCC	2 cut(s)	285, 332
HapII	CCGG	2 cut(s)	94, 219
Hin1II	CATG	3 cut(s)	244, 268, 277
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	94, 219
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	270, 443
Hpy188I	TCNGA	2 cut(s)	213, 366
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	270, 443
HpyAV	CCTTC	4 cut(s)	50, 73, 298, 460
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 230
HpyF3I	CTNAG	2 cut(s)	183, 212
Hsp92II	CATG	3 cut(s)	244, 268, 277
Kzo9I	GATC	4 cut(s)	250, 261, 352, 376
LmnI	GCTCC	2 cut(s)	221, 411
MalI	GATC	4 cut(s)	252, 263, 354, 378
MboI	GATC	4 cut(s)	250, 261, 352, 376
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	3 cut(s)	86, 357, 473
MlyI	GAGTC	1 cut(s)	196
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	94, 219
MspR9I	CCNGG	3 cut(s)	126, 170, 372
MvaI	CCWGG	3 cut(s)	126, 170, 372
MwoI	GCNNNNNNNGC	2 cut(s)	188, 230
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	250, 261, 352, 376
NlaIII	CATG	3 cut(s)	244, 268, 277
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	332
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	3 cut(s)	124, 168, 370
PspGI	CCWGG	3 cut(s)	124, 168, 370
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	216, 283
PsuI	RGATCY	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	263
Sau3AI	GATC	4 cut(s)	250, 261, 352, 376
Sau96I	GGNCC	2 cut(s)	216, 283
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	126, 170, 372
SetI	ASST	6 cut(s)	19, 127, 189, 239, 373, 408
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	86, 357, 473
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	124, 168, 370
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	464
TasI	AATT	3 cut(s)	86, 357, 473
TspDTI	ATGAA	3 cut(s)	55, 209, 229
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	2 cut(s)	86, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.