AT2G46630

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007445
Physical Location & Seq
Forward (+)
19145218 .. 19147147
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46630.1

Sequence Viewer

Length: 1185 bp
ATGTCTAACATTCGTCCATGGTTCCGTCTCTCTAGCATCGCTAGGCCTACAGCGCAAGGTTCAAGCGACCCACCTCCACCTCAACCTCGACCAACCTCTCGCAGTTCGCTCGTAGTCAGACCACCGGCAAAACAACCGTCACCTCCACGTCAGCGACAACCTCGTTCACCTCCACGTCAGCAAGATCCTCCTTCACCTCCACGTCAGCAGCAACAGCCTCTTACCCCTCCACGTCAGAAGGCTCCTCCAACTTCACCCCCTCAAGAGCGGTCCCCATATCATTCACCTCCAAGCCGCCACATGTCACCACCGACCCCACCAAAGGCTGCGACACCACCTCCGCCACCGCCTCGGTCGTCATACACGTCCCCACCATCTCCCAAGGAAGTTCAAGAAGCCTTACCACCGCGAAAACCGAACTCACCACCGAGTCCAGCTCATTCAAGTCGGTCTACAACATCTGAGTCAGTGAAAACTCGGTCTCCATCAGAGTCAGAGAATCATCGGAAAGCACCATCACCGAGAGTACTATCACCTTACTCTCTCCCAGCTTCTCTGTTACATTCCGAACGTGAAACCACTCAGAAAAACATTCTCACTGCCGAGAAAACAAGCCAAACCCACGAAACAAATCATCATAACCAGAATCATAACCATGACTATAACCAGAACCATAACTATAACCAAAACCATAGCTATAACCAAAACCAAAACCATCAAGGCAACAACCCCAAGAAGATGCATCGTCAACCATCTTCGTCCGATTCTGAGAACATAATGAGCACACGAGTCATCACCATTGCAGGTGAAAACAAAGGTGCAGTAATGGAGATCCTACGATCTCCTCAAGGCAACAAAACCGGTGGTTCAGGAACACATTCCTCTAGGGTTTCACACGGCACCGGAGAGAAAGGACGGAGACTTCAAAGCAGCAGCAGTAGCAGCAGCGACGAAGGAGAAGGTAAGAAGAAAACGACGAAGAACGTCCCTAACAAAGGCAATAGTAACCTCCCAATGAAAGCTTTTATGAATAGTAACGTTCAGATGATAAACAACTCCATTGTCTACAACTCGACGGCATCTCATCATGATCCCGGCGTTCATCTTAAAATCTCCCGGAAACCTGGCTCCGACAATGGTTTTCATGTCAGTGATTACGGTAATAATGGCGGATACACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

43.25

Weight (kDa)

10.54

Isoelectric Point (pI)

88.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 794
Acc36I ACCTGC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 899
AccBSI CCGCTC 1 cut(s) 268
AccI GTMKAC 2 cut(s) 452, 1065
AccII CGCG 1 cut(s) 409
AciI CCGC 6 cut(s) 268, 295, 341, 347, 407, 1170
AclI AACGTT 1 cut(s) 1038
AclWI GGATC 3 cut(s) 179, 826, 1085
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 322, 995
AflIII ACRYGT 2 cut(s) 300, 363
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 4 cut(s) 63, 392, 444, 926
AjiI CACGTC 5 cut(s) 149, 176, 203, 233, 366
AjnI CCWGG 1 cut(s) 1123
AluBI AGCT 4 cut(s) 437, 551, 696, 1022
AluI AGCT 4 cut(s) 437, 551, 696, 1022
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 3 cut(s) 32, 486, 913
AlwI GGATC 3 cut(s) 179, 826, 1085
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 6 cut(s) 208, 326, 930, 933, 942, 945
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsiGI ACCGGT 1 cut(s) 860
Asp700I GAANNNNTTC 1 cut(s) 877
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 2 cut(s) 1095, 1117
AvaII GGWCC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 899
BauI CACGAG 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 6 cut(s) 220, 313, 942, 945, 954, 957
BccI CCATC 5 cut(s) 382, 493, 523, 723, 760
BceAI ACGGC 2 cut(s) 913, 1092
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 1 cut(s) 1125
BciVI GTATCC 1 cut(s) 1166
BcnI CCSGG 2 cut(s) 1095, 1117
BcoDI GTCTC 3 cut(s) 32, 486, 913
BfaI CTAG 3 cut(s) 33, 42, 885
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 794
BfuI GTATCC 1 cut(s) 1166
BisI GCNGC 7 cut(s) 209, 295, 327, 931, 934, 943, 946
BlsI GCNGC 7 cut(s) 210, 296, 328, 932, 935, 944, 947
BmcAI AGTACT 1 cut(s) 528
Bme1390I CCNGG 3 cut(s) 1095, 1117, 1125
Bme18I GGWCC 1 cut(s) 270
BmgBI CACGTC 5 cut(s) 149, 176, 203, 233, 366
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 5 cut(s) 23, 243, 272, 901, 1129
BmrFI CCNGG 3 cut(s) 1095, 1117, 1125
BmsI GCATC 4 cut(s) 45, 729, 751, 1088
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpuEI CTTGAG 2 cut(s) 246, 831
BpuMI CCSGG 2 cut(s) 1095, 1117
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 17, 350, 381
BsaWI WCCGGW 2 cut(s) 860, 902
BsaXI ACNNNNNCTCC 4 cut(s) 322, 352, 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 995
Bse118I RCCGGY 2 cut(s) 124, 860
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 1125
BseDI CCNNGG 3 cut(s) 17, 350, 381
BseLI CCNNNNNNNGG 2 cut(s) 322, 995
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 3 cut(s) 453, 596, 759
BseRI GAGGAG 2 cut(s) 234, 834
BseXI GCAGC 6 cut(s) 220, 313, 942, 945, 954, 957
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 409
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 899
BshTI ACCGGT 1 cut(s) 860
BsiEI CGRYCG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 785
BsiSI CCGG 5 cut(s) 125, 861, 903, 1095, 1117
BslFI GGGAC 3 cut(s) 256, 352, 971
BslI CCNNNNNNNGG 2 cut(s) 322, 995
BsmAI GTCTC 3 cut(s) 32, 486, 913
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 3 cut(s) 256, 352, 971
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 4 cut(s) 184, 831, 839, 1090
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 6 cut(s) 268, 295, 341, 347, 407, 1170
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 3 cut(s) 454, 595, 760
BspFNI CGCG 1 cut(s) 409
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 5 cut(s) 23, 243, 272, 901, 1129
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 3 cut(s) 179, 826, 1085
BspT107I GGYRCC 1 cut(s) 899
BspTNI GGTCTC 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 2 cut(s) 124, 860
BssAI RCCGGY 2 cut(s) 124, 860
BssECI CCNNGG 3 cut(s) 17, 350, 381
BssMI GATC 4 cut(s) 184, 831, 839, 1090
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 2 cut(s) 17, 381
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 1 cut(s) 1125
Bst4CI ACNGT 2 cut(s) 138, 1160
BstDEI CTNAG 3 cut(s) 462, 582, 768
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 993
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 4 cut(s) 187, 834, 842, 1093
BstMAI GTCTC 3 cut(s) 32, 486, 913
BstMBI GATC 4 cut(s) 184, 831, 839, 1090
BstMCI CGRYCG 1 cut(s) 356
BstMWI GCNNNNNNNGC 4 cut(s) 52, 214, 939, 942
BstNI CCWGG 1 cut(s) 1125
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 1093, 1115, 1123
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 6 cut(s) 220, 313, 942, 945, 954, 957
BstX2I RGATCY 2 cut(s) 184, 831
BstYI RGATCY 2 cut(s) 184, 831
BsuI GTATCC 1 cut(s) 1166
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 22
BtrI CACGTC 5 cut(s) 149, 176, 203, 233, 366
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 474, 597, 1156
BveI ACCTGC 1 cut(s) 794
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 2 cut(s) 124, 860
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 527
CspAI ACCGGT 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 5 cut(s) 18, 301, 656, 1088, 1145
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 3 cut(s) 462, 582, 768
DpnI GATC 4 cut(s) 186, 833, 841, 1092
DpnII GATC 4 cut(s) 184, 831, 839, 1090
EciI GGCGGA 2 cut(s) 330, 1185
Eco130I CCWWGG 2 cut(s) 17, 381
Eco147I AGGCCT 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 1123
EcoT14I CCWWGG 2 cut(s) 17, 381
EcoT22I ATGCAT 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 17, 381
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 5 cut(s) 21, 304, 659, 1091, 1148
FaqI GGGAC 3 cut(s) 256, 352, 971
FatI CATG 5 cut(s) 17, 300, 655, 1087, 1144
FblI GTMKAC 2 cut(s) 452, 1065
Fnu4HI GCNGC 7 cut(s) 209, 295, 327, 931, 934, 943, 946
Fsp4HI GCNGC 7 cut(s) 209, 295, 327, 931, 934, 943, 946
FspBI CTAG 3 cut(s) 33, 42, 885
GlaI GCGC 1 cut(s) 54
GluI GCNGC 7 cut(s) 209, 295, 327, 931, 934, 943, 946
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 1 cut(s) 46
HapII CCGG 5 cut(s) 125, 861, 903, 1095, 1117
HhaI GCGC 1 cut(s) 55
Hin1II CATG 5 cut(s) 21, 304, 659, 1091, 1148
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 749
HindII GTYRAC 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 7 cut(s) 430, 464, 491, 499, 646, 764, 789
HpaII CCGG 5 cut(s) 125, 861, 903, 1095, 1117
Hpy166II GTNNAC 4 cut(s) 167, 453, 749, 1066
Hpy188III TCNNGA 4 cut(s) 263, 392, 870, 1088
Hpy8I GTNNAC 4 cut(s) 167, 453, 749, 1066
Hpy99I CGWCG 3 cut(s) 953, 979, 1078
HpyAV CCTTC 4 cut(s) 201, 232, 947, 953
HpyCH4III ACNGT 2 cut(s) 138, 1160
HpyCH4IV ACGT 8 cut(s) 148, 175, 202, 232, 365, 571, 984, 1038
HpyCH4V TGCA 3 cut(s) 742, 803, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 214, 939, 942
HpyF3I CTNAG 3 cut(s) 462, 582, 768
HpySE526I ACGT 8 cut(s) 148, 175, 202, 232, 365, 571, 984, 1038
Hsp92II CATG 5 cut(s) 21, 304, 659, 1091, 1148
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 4 cut(s) 184, 831, 839, 1090
LmnI GCTCC 2 cut(s) 247, 1133
Lsp1109I GCAGC 6 cut(s) 220, 313, 942, 945, 954, 957
LweI GCATC 4 cut(s) 45, 729, 751, 1088
MaeI CTAG 3 cut(s) 33, 42, 885
MaeII ACGT 8 cut(s) 148, 175, 202, 232, 365, 571, 984, 1038
MaeIII GTNAC 5 cut(s) 138, 303, 558, 1004, 1034
MalI GATC 4 cut(s) 186, 833, 841, 1092
MbiI CCGCTC 1 cut(s) 268
MboI GATC 4 cut(s) 184, 831, 839, 1090
MboII GAAGA 4 cut(s) 747, 748, 979, 991
MflI RGATCY 2 cut(s) 184, 831
MhlI GDGCHC 1 cut(s) 785
MlyI GAGTC 4 cut(s) 439, 473, 500, 798
MmeI TCCRAC 2 cut(s) 272, 1155
Mph1103I ATGCAT 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 1 cut(s) 1107
MslI CAYNNNNRTG 2 cut(s) 654, 1149
MspI CCGG 5 cut(s) 125, 861, 903, 1095, 1117
MspR9I CCNGG 3 cut(s) 1095, 1117, 1125
MvaI CCWGG 1 cut(s) 1125
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 4 cut(s) 52, 214, 939, 942
NciI CCSGG 2 cut(s) 1095, 1117
NcoI CCATGG 1 cut(s) 17
NdeII GATC 4 cut(s) 184, 831, 839, 1090
NlaIII CATG 5 cut(s) 21, 304, 659, 1091, 1148
NlaIV GGNNCC 5 cut(s) 23, 243, 272, 901, 1129
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 2 cut(s) 138, 303
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 1 cut(s) 304
PagI TCATGA 1 cut(s) 1087
PaqCI CACCTGC 1 cut(s) 794
PceI AGGCCT 1 cut(s) 46
PciI ACATGT 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 3 cut(s) 499, 646, 764
PfoI TCCNGGA 1 cut(s) 1115
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 7 cut(s) 210, 296, 328, 932, 935, 944, 947
PleI GAGTC 4 cut(s) 438, 472, 499, 797
PpsI GAGTC 4 cut(s) 438, 472, 499, 797
PscI ACATGT 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 1038
Psp6I CCWGG 1 cut(s) 1123
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 1123
PspN4I GGNNCC 5 cut(s) 23, 243, 272, 901, 1129
PspPI GGNCC 1 cut(s) 270
PsuI RGATCY 2 cut(s) 184, 831
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
RseI CAYNNNNRTG 2 cut(s) 654, 1149
SaqAI TTAA 1 cut(s) 1107
SatI GCNGC 7 cut(s) 209, 295, 327, 931, 934, 943, 946
Sau3AI GATC 4 cut(s) 184, 831, 839, 1090
Sau96I GGNCC 1 cut(s) 270
ScaI AGTACT 1 cut(s) 528
SchI GAGTC 4 cut(s) 439, 473, 500, 798
ScrFI CCNGG 3 cut(s) 1095, 1117, 1125
SduI GDGCHC 1 cut(s) 785
SfaNI GCATC 4 cut(s) 45, 729, 751, 1088
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 654, 1149
SmlI CTYRAG 2 cut(s) 261, 846
SmoI CTYRAG 2 cut(s) 261, 846
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 6 cut(s) 268, 295, 341, 347, 407, 1170
SspMI CTAG 3 cut(s) 33, 42, 885
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 3 cut(s) 1093, 1115, 1123
StyI CCWWGG 2 cut(s) 17, 381
TaaI ACNGT 2 cut(s) 138, 1160
TaiI ACGT 8 cut(s) 151, 178, 205, 235, 368, 574, 987, 1041
TaqI TCGA 2 cut(s) 88, 1073
TaqII GACCGA 3 cut(s) 342, 438, 468
TatI WGTACW 1 cut(s) 526
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 3 cut(s) 499, 646, 764
Tru1I TTAA 1 cut(s) 1107
Tru9I TTAA 1 cut(s) 1107
TscAI CASTG 3 cut(s) 474, 604, 1156
TseFI GTSAC 2 cut(s) 138, 303
TseI GCWGC 6 cut(s) 208, 326, 930, 933, 942, 945
Tsp45I GTSAC 2 cut(s) 138, 303
TspDTI ATGAA 4 cut(s) 1031, 1043, 1091, 1133
TspGWI ACGGA 2 cut(s) 14, 931
TspRI CASTG 3 cut(s) 474, 604, 1156
VpaK11BI GGWCC 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 993
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 2 cut(s) 452, 1065
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 3 cut(s) 33, 42, 885
ZrmI AGTACT 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.