Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007445

Physical Location & Seq

Genomic Coordinates Forward (+)

38773220 .. 38774964

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG257300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGGTTATAACTCTTGCAGGTGATAACAAAGGGGCTTATATGGAACTCATTCGATCCCCTAATAAACATCATGAGCAACGTGGGGAGCATTCTCATTATCTTTTCAAGAAAGGCCACAATGGAAAGTCGGCACAGATAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGCAGCAGTGGCGAGGAAGGCAAGCCAAAAATGAAGGACAAAAGTCACCACAAAGGAATTAAGGCAGGGAGCTCATCACTGCTGCCTCTGAGTTCATTCACAAACAACAATGTTCAAGGTATCAACAACTCCATTGTGTACAACAGTTCTTGCACTCACCACGACCCGGGCGTGCACCTTGCTCTCACTAGGAAGCCCAATGGGAATGGATTCGATGTCAAGAGCCATGTCAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.9

Weight (kDa)

9.61

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46630
fragaria_vesca	FvH4_4g01200 FvH4_4g01200 FvH4_7g17260
prunus_persica	Prupe.2G193900_v2.0.a1
pyrus_communis	pycom07g15240
rosa_chinensis	RchiOBHm_Chr1g0360631 RchiOBHm_Chr3g0484701
rosa_laevigata	RLG00000023206 RLG00000027793
rosa_multiflora	Rmu_sc0001910.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295940 Rroxscaffold_6G00397490
rosa_rugosa	Rorug01G0280500 Rorug03G0213600
rosa_samantha	Rh1AG292400 Rh1BG257300 Rh1CG275100 Rh1DG287200 Rh3AG263800 Rh3BG298900 Rh3CG296400 Rh3DG292500
rosa_wichuraiana	Rw1G025890 Rw3G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	109, 290
AluBI	AGCT	2 cut(s)	168, 246
AluI	AGCT	2 cut(s)	168, 246
Alw21I	GWGCWC	2 cut(s)	248, 351
Alw44I	GTGCAC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	174, 177, 256
Asp700I	GAANNNNTTC	2 cut(s)	51, 383
AsuC2I	CCSGG	2 cut(s)	341, 342
AsuHPI	GGTGA	3 cut(s)	35, 212, 323
AvaI	CYCGRG	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	248, 351
BbvI	GCAGC	3 cut(s)	186, 189, 243
BcnI	CCSGG	2 cut(s)	341, 342
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	175, 178, 257
BlsI	GCNGC	3 cut(s)	176, 179, 258
Bme1390I	CCNGG	2 cut(s)	341, 342
BmeT110I	CYCGRG	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	341, 342
BoxI	GACNNNNGTC	1 cut(s)	216
BpuMI	CCSGG	2 cut(s)	341, 342
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	186, 189, 243
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	248, 351
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	248, 351
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	2 cut(s)	73, 151
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	197, 347
BstDEI	CTNAG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 192
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	339, 340
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	186, 189, 243
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	117
BtsI	GCAGTG	2 cut(s)	187, 251
BtsIMutI	CAGTG	2 cut(s)	187, 251
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	197, 347
CciI	TCATGA	2 cut(s)	73, 151
Cfr9I	CCCGGG	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	74, 152, 401
CviJI	RGCY	8 cut(s)	38, 117, 168, 199, 246, 370, 399, 411
CviKI_1	RGCY	8 cut(s)	38, 117, 168, 199, 246, 370, 399, 411
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	248
FaeI	CATG	3 cut(s)	77, 155, 404
FaiI	YATR	6 cut(s)	11, 42, 44, 75, 153, 402
FatI	CATG	3 cut(s)	73, 151, 400
Fnu4HI	GCNGC	3 cut(s)	175, 178, 257
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	175, 178, 257
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	3 cut(s)	175, 178, 257
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	3 cut(s)	77, 155, 404
HinfI	GANTC	3 cut(s)	148, 155, 384
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	35, 212, 323
Hpy166II	GTNNAC	2 cut(s)	313, 349
Hpy188I	TCNGA	2 cut(s)	160, 264
Hpy188III	TCNNGA	4 cut(s)	74, 109, 152, 394
Hpy8I	GTNNAC	2 cut(s)	313, 349
HpyAV	CCTTC	2 cut(s)	185, 202
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	20, 327, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 192
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	77, 155, 404
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	88, 243
LpnPI	CCDG	3 cut(s)	6, 225, 354
Lsp1109I	GCAGC	3 cut(s)	186, 189, 243
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	248, 351
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	181, 270
MroXI	GAANNNNTTC	2 cut(s)	51, 383
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	341, 342
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 192
NciI	CCSGG	2 cut(s)	341, 342
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	3 cut(s)	77, 155, 404
NmuCI	GTSAC	1 cut(s)	218
PagI	TCATGA	2 cut(s)	73, 151
PaqCI	CACCTGC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	51, 383
PfeI	GAWTC	2 cut(s)	155, 384
PkrI	GCNGC	3 cut(s)	176, 179, 258
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PshAI	GACNNNNGTC	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	175, 178, 257
Sau3AI	GATC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	341, 342
SduI	GDGCHC	2 cut(s)	248, 351
SetI	ASST	6 cut(s)	25, 85, 170, 248, 295, 354
SfcI	CTRYAG	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	339, 340
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	55, 387
TasI	AATT	1 cut(s)	231
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	155, 384
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	187, 258
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	174, 177, 256
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	168, 221, 258
TspMI	CCCGGG	1 cut(s)	340
TspRI	CASTG	2 cut(s)	187, 258
VneI	GTGCAC	1 cut(s)	347
XmaI	CCCGGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	51, 383
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.