Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007445

Physical Location & Seq

Genomic Coordinates Reverse (-)

16044188 .. 16045948

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCATCACAACCTACTCGTCCTTGGTTTCGACTAAGCTCCATGGTGCGGCCAGCCCCGGCACCAACCCAGGCTCCTGCACCAACCCCGACACCCACCCCGGCCCCTGCCCCTGCACCTGTGGTTCGACCTACATTGAGGCCGCTAGCTCCTCCTCCTCCTGCTGAACCCACTCCACCACCACCAGCGGTCCGAGCTCCAACTTCGCCAGCACCAGCAGCCCTAACTCCAACTCCACCGCCACCAGCGGTCCGAGCTCCAACTCCGCCAGCACCAGCAGCCCCAACTCCAACTCGACGGCCACTAGCAGCCTTAACTCCAACTCCACGGCCATCTGCTGTGGCACCCCCATCGGTTGCTGCTGCTCGAGCACCACCACCACCTCTGGCTGTGACGAGTTCTACTGCATCTGTTCCATCGTCCCCAGCTCGTGGCGTTAGTTCTGCTCCCTCAGTAGCATCCCCTCCTGCAACTGCAATTGCCATCACATCCGCTTCATCAGTACCATCATCTCCTGGAAAGGTAGCCCCATTCTCTACATCAGGGGTGCCATCTCCTAGAAGCAGGGTCACTACTTCAGTGTCCGACTATCCAGCTACCTCCAGAGCAGTACCACCACCACAAACTTCTCCACCAAAACCCGTAGCCGCTACAATTTCAGTGCCACGACAAACTTATTCTCCACCAAAACCCAGTTACACAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCTAGTCACATTCCACCTCCCAGAACCCTTAAGTCGGTGAATAATACCCCACCTCAGTCGCCTAGCAGGCCCAAACCTACTGCCCCACCACCCTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAATGATTCCATTAGAGGCTGAGCAGAAGACGGTGCTGGTCCAAAAGACCATAAATCAAAAGCCGACTTCCTGGTTCAGTACTGGAGTCTCAAAGCAGGATCATGATTCTACTCATGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACCAAGAAGAAGTTATCATCTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

37.27

Weight (kDa)

11.45

Isoelectric Point (pI)

87.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46630
fragaria_vesca	FvH4_4g01200 FvH4_4g01200 FvH4_7g17260
prunus_persica	Prupe.2G193900_v2.0.a1
pyrus_communis	pycom07g15240
rosa_chinensis	RchiOBHm_Chr1g0360631 RchiOBHm_Chr3g0484701
rosa_laevigata	RLG00000023206 RLG00000027793
rosa_multiflora	Rmu_sc0001910.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295940 Rroxscaffold_6G00397490
rosa_rugosa	Rorug01G0280500 Rorug03G0213600
rosa_samantha	Rh1AG292400 Rh1BG257300 Rh1CG275100 Rh1DG287200 Rh3AG263800 Rh3BG298900 Rh3CG296400 Rh3DG292500
rosa_wichuraiana	Rw1G025890 Rw3G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	61, 343, 547
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	8 cut(s)	49, 143, 188, 239, 248, 266, 492, 648
AclWI	GGATC	1 cut(s)	996
AcoI	YGGCCR	3 cut(s)	50, 299, 329
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	4 cut(s)	504, 612, 721, 970
AfiI	CCNNNNNNNGG	3 cut(s)	48, 431, 772
AflII	CTTAAG	1 cut(s)	767
AjnI	CCWGG	4 cut(s)	69, 514, 959, 1018
AluBI	AGCT	6 cut(s)	39, 149, 197, 257, 428, 596
AluI	AGCT	6 cut(s)	39, 149, 197, 257, 428, 596
Alw21I	GWGCWC	3 cut(s)	199, 259, 373
Alw26I	GTCTC	1 cut(s)	982
AlwI	GGATC	1 cut(s)	996
Ama87I	CYCGRG	2 cut(s)	366, 726
AoxI	GGCC	7 cut(s)	50, 102, 140, 299, 329, 806, 1016
ApeKI	GCWGC	5 cut(s)	218, 278, 308, 359, 362
AspS9I	GGNCC	6 cut(s)	103, 190, 250, 807, 864, 928
AsuC2I	CCSGG	2 cut(s)	59, 101
AsuHPI	GGTGA	2 cut(s)	787, 1051
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	366, 726
AvaII	GGWCC	4 cut(s)	190, 250, 864, 928
BanI	GGYRCC	3 cut(s)	61, 343, 547
BanII	GRGCYC	2 cut(s)	199, 259
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	3 cut(s)	199, 259, 373
BbvI	GCAGC	5 cut(s)	230, 290, 320, 346, 349
BccI	CCATC	7 cut(s)	340, 358, 424, 491, 514, 559, 859
BceAI	ACGGC	2 cut(s)	314, 344
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	4 cut(s)	71, 516, 961, 1020
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	2 cut(s)	59, 101
BcoDI	GTCTC	1 cut(s)	982
BfaI	CTAG	6 cut(s)	146, 305, 558, 735, 741, 801
BfmI	CTRYAG	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	767
BglI	GCCNNNNNGGC	1 cut(s)	805
BisI	GCNGC	8 cut(s)	50, 143, 219, 279, 309, 360, 363, 648
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	8 cut(s)	51, 144, 220, 280, 310, 361, 364, 649
BmcAI	AGTACT	2 cut(s)	721, 970
Bme1390I	CCNGG	6 cut(s)	59, 71, 101, 516, 961, 1020
Bme18I	GGWCC	4 cut(s)	190, 250, 864, 928
BmeT110I	CYCGRG	2 cut(s)	366, 726
BmgT120I	GGNCC	6 cut(s)	103, 190, 250, 807, 864, 928
BmiI	GGNNCC	6 cut(s)	63, 75, 105, 345, 549, 732
BmrFI	CCNGG	6 cut(s)	59, 71, 101, 516, 961, 1020
BmrI	ACTGGG	2 cut(s)	687, 711
BmsI	GCATC	3 cut(s)	14, 416, 467
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	2 cut(s)	687, 711
BpiI	GAAGAC	1 cut(s)	923
BpmI	CTGGAG	2 cut(s)	586, 993
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuMI	CCSGG	2 cut(s)	59, 101
BsaJI	CCNNGG	6 cut(s)	23, 42, 57, 69, 99, 326
BsaXI	ACNNNNNCTCC	8 cut(s)	58, 88, 217, 247, 307, 337, 664, 694
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 431, 772
Bse1I	ACTGG	3 cut(s)	693, 717, 976
BseBI	CCWGG	4 cut(s)	71, 516, 961, 1020
BseDI	CCNNGG	6 cut(s)	23, 42, 57, 69, 99, 326
BseGI	GGATG	2 cut(s)	458, 488
BseLI	CCNNNNNNNGG	3 cut(s)	48, 431, 772
BseMII	CTCAG	4 cut(s)	465, 806, 869, 900
BseNI	ACTGG	3 cut(s)	693, 717, 976
BseRI	GAGGAG	4 cut(s)	141, 144, 147, 825
BseXI	GCAGC	5 cut(s)	230, 290, 320, 346, 349
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	2 cut(s)	63, 99
BshFI	GGCC	7 cut(s)	52, 104, 142, 301, 331, 808, 1018
BshNI	GGYRCC	3 cut(s)	61, 343, 547
BsiHKAI	GWGCWC	3 cut(s)	199, 259, 373
BsiHKCI	CYCGRG	2 cut(s)	366, 726
BsiSI	CCGG	2 cut(s)	59, 101
BslFI	GGGAC	2 cut(s)	406, 994
BslI	CCNNNNNNNGG	3 cut(s)	48, 431, 772
BsmAI	GTCTC	1 cut(s)	982
BsmFI	GGGAC	2 cut(s)	406, 994
BsnI	GGCC	7 cut(s)	52, 104, 142, 301, 331, 808, 1018
BsoBI	CYCGRG	2 cut(s)	366, 726
Bsp1286I	GDGCHC	3 cut(s)	199, 259, 373
Bsp143I	GATC	3 cut(s)	877, 886, 988
Bsp1720I	GCTNAGC	1 cut(s)	909
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	8 cut(s)	49, 143, 188, 239, 248, 266, 492, 648
BspANI	GGCC	7 cut(s)	52, 104, 142, 301, 331, 808, 1018
BspCNI	CTCAG	4 cut(s)	464, 805, 868, 901
BspHI	TCATGA	2 cut(s)	991, 1003
BspLI	GGNNCC	6 cut(s)	63, 75, 105, 345, 549, 732
BspMAI	CTGCAG	1 cut(s)	877
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	996
BspT107I	GGYRCC	3 cut(s)	61, 343, 547
BspTI	CTTAAG	1 cut(s)	767
BsrI	ACTGG	3 cut(s)	693, 717, 976
BssECI	CCNNGG	6 cut(s)	23, 42, 57, 69, 99, 326
BssMI	GATC	3 cut(s)	877, 886, 988
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	23, 42
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	4 cut(s)	71, 516, 961, 1020
Bst4CI	ACNGT	1 cut(s)	922
Bst6I	CTCTTC	1 cut(s)	1044
BstAFI	CTTAAG	1 cut(s)	767
BstC8I	GCNNGC	5 cut(s)	54, 147, 210, 270, 806
BstDEI	CTNAG	5 cut(s)	35, 451, 792, 855, 909
BstDSI	CCRYGG	2 cut(s)	42, 326
BstF5I	GGATG	2 cut(s)	458, 488
BstKTI	GATC	3 cut(s)	880, 889, 991
BstMAI	GTCTC	1 cut(s)	982
BstMBI	GATC	3 cut(s)	877, 886, 988
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 218, 254, 278, 368, 805, 1037
BstNI	CCWGG	4 cut(s)	71, 516, 961, 1020
BstSCI	CCNGG	6 cut(s)	57, 69, 99, 514, 959, 1018
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	5 cut(s)	230, 290, 320, 346, 349
BstV2I	GAAGAC	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	1019
BsuRI	GGCC	7 cut(s)	52, 104, 142, 301, 331, 808, 1018
BtgI	CCRYGG	2 cut(s)	42, 326
BtsCI	GGATG	2 cut(s)	458, 488
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	3 cut(s)	585, 666, 870
Cac8I	GCNNGC	5 cut(s)	54, 147, 210, 270, 806
CciI	TCATGA	2 cut(s)	991, 1003
Cfr13I	GGNCC	6 cut(s)	103, 190, 250, 807, 864, 928
CpoI	CGGWCCG	2 cut(s)	190, 250
Csp6I	GTAC	4 cut(s)	503, 611, 720, 969
CspI	CGGWCCG	2 cut(s)	190, 250
CviAII	CATG	5 cut(s)	43, 992, 1004, 1028, 1037
CviQI	GTAC	4 cut(s)	503, 611, 720, 969
DdeI	CTNAG	5 cut(s)	35, 451, 792, 855, 909
DpnI	GATC	3 cut(s)	879, 888, 990
DpnII	GATC	3 cut(s)	877, 886, 988
EaeI	YGGCCR	3 cut(s)	50, 299, 329
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
EciI	GGCGGA	1 cut(s)	255
Ecl136II	GAGCTC	2 cut(s)	197, 257
Eco130I	CCWWGG	2 cut(s)	23, 42
Eco147I	AGGCCT	1 cut(s)	1018
Eco24I	GRGCYC	2 cut(s)	199, 259
Eco47I	GGWCC	4 cut(s)	190, 250, 864, 928
Eco53kI	GAGCTC	2 cut(s)	197, 257
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	366, 726
EcoICRI	GAGCTC	2 cut(s)	197, 257
EcoRII	CCWGG	4 cut(s)	69, 514, 959, 1018
EcoT14I	CCWWGG	2 cut(s)	23, 42
EcoT38I	GRGCYC	2 cut(s)	199, 259
ErhI	CCWWGG	2 cut(s)	23, 42
FaeI	CATG	5 cut(s)	46, 995, 1007, 1031, 1040
FaiI	YATR	6 cut(s)	44, 941, 993, 1005, 1029, 1038
FaqI	GGGAC	2 cut(s)	406, 994
FatI	CATG	5 cut(s)	42, 991, 1003, 1027, 1036
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	8 cut(s)	50, 143, 219, 279, 309, 360, 363, 648
FokI	GGATG	2 cut(s)	445, 475
FriOI	GRGCYC	2 cut(s)	199, 259
Fsp4HI	GCNGC	8 cut(s)	50, 143, 219, 279, 309, 360, 363, 648
FspBI	CTAG	6 cut(s)	146, 305, 558, 735, 741, 801
GluI	GCNGC	8 cut(s)	50, 143, 219, 279, 309, 360, 363, 648
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	2 cut(s)	586, 993
HaeIII	GGCC	7 cut(s)	52, 104, 142, 301, 331, 808, 1018
HapII	CCGG	2 cut(s)	59, 101
Hin1II	CATG	5 cut(s)	46, 995, 1007, 1031, 1040
HinfI	GANTC	4 cut(s)	895, 975, 995, 1007
HpaII	CCGG	2 cut(s)	59, 101
HphI	GGTGA	2 cut(s)	787, 1051
Hpy188I	TCNGA	4 cut(s)	194, 254, 586, 1081
Hpy188III	TCNNGA	4 cut(s)	603, 728, 992, 1004
Hpy99I	CGWCG	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4V	TGCA	7 cut(s)	80, 116, 407, 470, 476, 875, 1040
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 218, 254, 278, 368, 805, 1037
HpyF3I	CTNAG	5 cut(s)	35, 451, 792, 855, 909
Hsp92II	CATG	5 cut(s)	46, 995, 1007, 1031, 1040
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	877, 886, 988
LmnI	GCTCC	7 cut(s)	44, 79, 154, 202, 262, 451, 730
Lsp1109I	GCAGC	5 cut(s)	230, 290, 320, 346, 349
LweI	GCATC	3 cut(s)	14, 416, 467
MaeI	CTAG	6 cut(s)	146, 305, 558, 735, 741, 801
MaeIII	GTNAC	4 cut(s)	391, 568, 695, 743
MalI	GATC	3 cut(s)	879, 888, 990
MboI	GATC	3 cut(s)	877, 886, 988
MboII	GAAGA	3 cut(s)	928, 1061, 1078
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	3 cut(s)	199, 259, 373
MluCI	AATT	2 cut(s)	477, 654
MlyI	GAGTC	2 cut(s)	984, 1016
MmeI	TCCRAC	6 cut(s)	224, 254, 284, 314, 344, 609
MseI	TTAA	3 cut(s)	314, 768, 860
MspA1I	CMGCKG	2 cut(s)	188, 248
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	2 cut(s)	59, 101
MspR9I	CCNGG	6 cut(s)	59, 71, 101, 516, 961, 1020
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	4 cut(s)	71, 516, 961, 1020
MwoI	GCNNNNNNNGC	7 cut(s)	194, 218, 254, 278, 368, 805, 1037
NciI	CCSGG	2 cut(s)	59, 101
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	877, 886, 988
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	5 cut(s)	46, 995, 1007, 1031, 1040
NlaIV	GGNNCC	6 cut(s)	63, 75, 105, 345, 549, 732
NmuCI	GTSAC	3 cut(s)	391, 568, 743
PaeR7I	CTCGAG	1 cut(s)	366
PagI	TCATGA	2 cut(s)	991, 1003
PceI	AGGCCT	1 cut(s)	1018
PfeI	GAWTC	2 cut(s)	895, 995
PflMI	CCANNNNNTGG	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	8 cut(s)	51, 144, 220, 280, 310, 361, 364, 649
PleI	GAGTC	2 cut(s)	983, 1015
PpsI	GAGTC	2 cut(s)	983, 1015
Psp124BI	GAGCTC	2 cut(s)	199, 259
Psp6I	CCWGG	4 cut(s)	69, 514, 959, 1018
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	4 cut(s)	69, 514, 959, 1018
PspN4I	GGNNCC	6 cut(s)	63, 75, 105, 345, 549, 732
PspPI	GGNCC	6 cut(s)	103, 190, 250, 807, 864, 928
PspXI	VCTCGAGB	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	877
RsaI	GTAC	4 cut(s)	504, 612, 721, 970
RsaNI	GTAC	4 cut(s)	503, 611, 720, 969
Rsr2I	CGGWCCG	2 cut(s)	190, 250
RsrII	CGGWCCG	2 cut(s)	190, 250
SacI	GAGCTC	2 cut(s)	199, 259
SaqAI	TTAA	3 cut(s)	314, 768, 860
SatI	GCNGC	8 cut(s)	50, 143, 219, 279, 309, 360, 363, 648
Sau3AI	GATC	3 cut(s)	877, 886, 988
Sau96I	GGNCC	6 cut(s)	103, 190, 250, 807, 864, 928
ScaI	AGTACT	2 cut(s)	721, 970
SchI	GAGTC	2 cut(s)	984, 1016
ScrFI	CCNGG	6 cut(s)	59, 71, 101, 516, 961, 1020
SduI	GDGCHC	3 cut(s)	199, 259, 373
SfaNI	GCATC	3 cut(s)	14, 416, 467
SfcI	CTRYAG	1 cut(s)	873
Sfr274I	CTCGAG	1 cut(s)	366
SinI	GGWCC	4 cut(s)	190, 250, 864, 928
SlaI	CTCGAG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	366, 767
SmoI	CTYRAG	2 cut(s)	366, 767
Sse9I	AATT	2 cut(s)	477, 654
SseBI	AGGCCT	1 cut(s)	1018
SsiI	CCGC	8 cut(s)	49, 143, 188, 239, 248, 266, 492, 648
SspMI	CTAG	6 cut(s)	146, 305, 558, 735, 741, 801
SstI	GAGCTC	2 cut(s)	199, 259
StuI	AGGCCT	1 cut(s)	1018
StyD4I	CCNGG	6 cut(s)	57, 69, 99, 514, 959, 1018
StyI	CCWWGG	2 cut(s)	23, 42
TaaI	ACNGT	1 cut(s)	922
TaqI	TCGA	4 cut(s)	31, 127, 295, 367
TasI	AATT	2 cut(s)	477, 654
TatI	WGTACW	2 cut(s)	719, 968
TauI	GCSGC	3 cut(s)	52, 145, 650
TfiI	GAWTC	2 cut(s)	895, 995
Tru1I	TTAA	3 cut(s)	314, 768, 860
Tru9I	TTAA	3 cut(s)	314, 768, 860
TscAI	CASTG	3 cut(s)	585, 666, 877
TseFI	GTSAC	3 cut(s)	391, 568, 743
TseI	GCWGC	5 cut(s)	218, 278, 308, 359, 362
Tsp45I	GTSAC	3 cut(s)	391, 568, 743
TspDTI	ATGAA	2 cut(s)	486, 699
TspRI	CASTG	3 cut(s)	585, 666, 877
Van91I	CCANNNNNTGG	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	4 cut(s)	190, 250, 864, 928
XhoI	CTCGAG	1 cut(s)	366
XspI	CTAG	6 cut(s)	146, 305, 558, 735, 741, 801
ZrmI	AGTACT	2 cut(s)	721, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.