Rw1G025890

Vegetative cell wall protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
52704367 .. 52705992
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025890.1

Sequence Viewer

Length: 1626 bp
ATGGCATCACAACCTACTCGTCCTTGGTTTCGACTAAGCTCCATGGTGCCAGCCCCGGCACCAACCCCGACTCCTGCACCAGCCCCGGCTCCTTCCCCAACCCCGGCTCCCTCCCCGGCACCAACCCCGGCCCCTGCACCAGTCCCGGCTCCTGCACCAGCCCTGGCTCCTGCACCAACCCTGGCTCCTGCACCAGCCCTGGCTCCTTCCCCAGCCCTGGCTCCTGCAGCAGCCCAGGCACCCGCCCCGGCACCAACCCTTGCCCCTGTAACTGTGGTTCGACCTACATTGAGGCCGCTAGCTCCTCCTCCTCCTGTTGAACCCACTCCACCAGCAGCAGCGGTCCGAGCTCCAACTCTGCCAGCACCAGCAGCCCCAACTCCAACTCCACCGCCACAAGAGTTCCGAGCTCCAACTCCGCTCGCACCAGCAGCCCTAACTCCAACTCCACGGCCACTAGTAGCCCCAGCTCCAACTCCACGGCCATCTGCTGTGGCACCCCCACCGATTGCTGCTGCTCCAGCACCACCACCACCTCTGGCTGTCCCTAGTTCTACTGCATCTGTTCCATCATCCCCAGCTCGTGGCGTTAGTTTTGCTCCCTCAATAGCATCCCCTCCTGCAACTGCAATTGCCATCACATCCGCTTCATCAGTACCATCATCTCCTGGAAAGGTAGCCCCATCCTCTACATCAGGGGTGCCATCTCCTAAAAGTAGGGTCACTACTTCAGTGTCCGACTATCCAGCTACCTCCAGAGCAGTACCACCACCACAGACTTCTCCACCAAAACCTGCAGCTGCTACAATTTCAGTGCCACGACAAACTTATTCTCCACCTAAACCCAGAAGCACAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCAAGTTACATTCCACCTAAACCTACTGTCCCGCCACCCTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAAGGATTCCATTAGAGGTTAAGCAGAAGACGGTGCTGGTCCAAAAGACCATTGATCAAAAGCCGACTTCCTGGTTCAGTACTGGAGTCTCAAAGAAGGATCATGACTCTACTCGTGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACCAAGAAGAAGTTATCATCTGATTCTGAGGAGGCTCCAAGCATGAGGGTTATTACTCTTGCAGGTGATAACAAAGGGGCTTATATGGAACTCATTCGATCCCCTAATAAACAACATGAGCAACGTGGGGAGCATTCTTATTATCTTTTCAAGAAAGGCCACAATGGTAAGTCGGCACAGACAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGCAGTAGTAGTGGCGAGGAAGGTAAGCCAAAAATGAAGGACAAAAGTCACCATAAAGGAATTAAGGCAGGGAGCTCATCACTGTTGCCTCTGAGTTCATTCACAAACAGCAATGTTCAAGGTATCAACAACTCCATTGTGTACAACAGTTCCTGCACTCACCATGACCCAGGCGTGCACCTTTCTCTCACTAGGAAGCCCAATGGGGATGGATTCGATGTCAAGAACCATGTCAATGGCCGACACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

541

Amino Acids

55.69

Weight (kDa)

10.19

Isoelectric Point (pI)

79.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1211
Acc36I ACCTGC 2 cut(s) 802, 1211
AccB1I GGYRCC 7 cut(s) 46, 58, 118, 238, 250, 496, 700
AccB7I CCANNNNNTGG 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 421
AciI CCGC 7 cut(s) 243, 296, 341, 392, 419, 645, 923
AclWI GGATC 2 cut(s) 1095, 1251
AcoI YGGCCR 3 cut(s) 452, 482, 1612
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 5 cut(s) 657, 765, 874, 1069, 1517
AfiI CCNNNNNNNGG 3 cut(s) 103, 217, 584
AgsI TTSAA 3 cut(s) 320, 1309, 1493
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 9 cut(s) 162, 180, 198, 216, 234, 667, 1058, 1117, 1543
Alw21I GWGCWC 4 cut(s) 352, 412, 1451, 1554
Alw26I GTCTC 1 cut(s) 1081
Alw44I GTGCAC 1 cut(s) 1550
AlwI GGATC 2 cut(s) 1095, 1251
AlwNI CAGNNNCTG 1 cut(s) 1527
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 7 cut(s) 129, 293, 452, 482, 1115, 1315, 1612
ApaLI GTGCAC 1 cut(s) 1550
Asp700I GAANNNNTTC 1 cut(s) 1251
AspS9I GGNCC 4 cut(s) 130, 343, 963, 1027
AsuC2I CCSGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
AsuHPI GGTGA 4 cut(s) 1150, 1235, 1415, 1526
AsuNHI GCTAGC 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 3 cut(s) 343, 963, 1027
BaeGI GKGCMC 1 cut(s) 1554
BanI GGYRCC 7 cut(s) 46, 58, 118, 238, 250, 496, 700
BanII GRGCYC 3 cut(s) 352, 412, 1451
BauI CACGAG 2 cut(s) 582, 1101
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 4 cut(s) 352, 412, 1451, 1554
BccI CCATC 8 cut(s) 493, 577, 644, 667, 691, 712, 958, 1577
BceAI ACGGC 2 cut(s) 467, 497
BciT130I CCWGG 9 cut(s) 164, 182, 200, 218, 236, 669, 1060, 1119, 1545
BclI TGATCA 2 cut(s) 985, 1042
BcnI CCSGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
BcoDI GTCTC 1 cut(s) 1081
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 5 cut(s) 299, 458, 549, 888, 1566
BfmI CTRYAG 4 cut(s) 225, 795, 972, 1369
BfuAI ACCTGC 2 cut(s) 802, 1211
BmcAI AGTACT 2 cut(s) 874, 1069
Bme18I GGWCC 3 cut(s) 343, 963, 1027
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 4 cut(s) 130, 343, 963, 1027
BmrI ACTGGG 1 cut(s) 864
BmsI GCATC 3 cut(s) 14, 569, 620
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 864
BoxI GACNNNNGTC 1 cut(s) 1419
BpiI GAAGAC 1 cut(s) 1022
BpmI CTGGAG 3 cut(s) 504, 739, 1092
BpuMI CCSGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 217, 584
Bse1I ACTGG 3 cut(s) 140, 870, 1075
Bse3DI GCAATG 1 cut(s) 1492
BseBI CCWGG 9 cut(s) 164, 182, 200, 218, 236, 669, 1060, 1119, 1545
BseGI GGATG 5 cut(s) 572, 611, 641, 683, 1588
BseLI CCNNNNNNNGG 3 cut(s) 103, 217, 584
BseMI GCAATG 1 cut(s) 1492
BseMII CTCAG 3 cut(s) 968, 1176, 1457
BseNI ACTGG 3 cut(s) 140, 870, 1075
BseRI GAGGAG 5 cut(s) 294, 297, 300, 924, 1202
BseSI GKGCMC 1 cut(s) 1554
BseYI CCCAGC 3 cut(s) 211, 466, 577
BsgI GTGCAG 6 cut(s) 60, 120, 138, 156, 174, 1513
BshFI GGCC 7 cut(s) 131, 295, 454, 484, 1117, 1317, 1614
BshNI GGYRCC 7 cut(s) 46, 58, 118, 238, 250, 496, 700
BsiHKAI GWGCWC 4 cut(s) 352, 412, 1451, 1554
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
BslFI GGGAC 4 cut(s) 128, 530, 905, 1093
BslI CCNNNNNNNGG 3 cut(s) 103, 217, 584
BsmAI GTCTC 1 cut(s) 1081
BsmFI GGGAC 4 cut(s) 128, 530, 905, 1093
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 7 cut(s) 131, 295, 454, 484, 1117, 1317, 1614
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 4 cut(s) 352, 412, 1451, 1554
Bsp1407I TGTACA 1 cut(s) 1515
Bsp143I GATC 5 cut(s) 976, 985, 1042, 1087, 1256
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 7 cut(s) 243, 296, 341, 392, 419, 645, 923
BspANI GGCC 7 cut(s) 131, 295, 454, 484, 1117, 1317, 1614
BspCNI CTCAG 3 cut(s) 967, 1177, 1458
BspHI TCATGA 2 cut(s) 1090, 1351
BspMAI CTGCAG 3 cut(s) 229, 799, 976
BspMI ACCTGC 2 cut(s) 802, 1211
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 1095, 1251
BspT107I GGYRCC 7 cut(s) 46, 58, 118, 238, 250, 496, 700
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 1492
BsrGI TGTACA 1 cut(s) 1515
BsrI ACTGG 3 cut(s) 140, 870, 1075
BssMI GATC 5 cut(s) 976, 985, 1042, 1087, 1256
BssSI CACGAG 2 cut(s) 582, 1101
BssT1I CCWWGG 2 cut(s) 23, 42
Bst2BI CACGAG 2 cut(s) 582, 1101
Bst2UI CCWGG 9 cut(s) 164, 182, 200, 218, 236, 669, 1060, 1119, 1545
Bst4CI ACNGT 7 cut(s) 274, 919, 1021, 1342, 1458, 1523, 1622
Bst6I CTCTTC 1 cut(s) 1143
BstAUI TGTACA 1 cut(s) 1515
BstC8I GCNNGC 5 cut(s) 51, 300, 363, 423, 1550
BstDEI CTNAG 4 cut(s) 35, 954, 1185, 1466
BstDSI CCRYGG 3 cut(s) 42, 449, 479
BstF5I GGATG 5 cut(s) 572, 611, 641, 683, 1588
BstKTI GATC 5 cut(s) 979, 988, 1045, 1090, 1259
BstMAI GTCTC 1 cut(s) 1081
BstMBI GATC 5 cut(s) 976, 985, 1042, 1087, 1256
BstMWI GCNNNNNNNGC 8 cut(s) 227, 236, 347, 371, 431, 521, 1136, 1374
BstNI CCWGG 9 cut(s) 164, 182, 200, 218, 236, 669, 1060, 1119, 1545
BstPAI GACNNNNGTC 1 cut(s) 1419
BstSFI CTRYAG 4 cut(s) 225, 795, 972, 1369
BstSLI GKGCMC 1 cut(s) 1554
BstV2I GAAGAC 1 cut(s) 1022
BstXI CCANNNNNNTGG 2 cut(s) 1118, 1610
BsuRI GGCC 7 cut(s) 131, 295, 454, 484, 1117, 1317, 1614
BtgI CCRYGG 3 cut(s) 42, 449, 479
BtsCI GGATG 5 cut(s) 572, 611, 641, 683, 1588
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 4 cut(s) 738, 819, 969, 1454
BveI ACCTGC 2 cut(s) 802, 1211
Cac8I GCNNGC 5 cut(s) 51, 300, 363, 423, 1550
CaiI CAGNNNCTG 1 cut(s) 1527
CciI TCATGA 2 cut(s) 1090, 1351
Cfr13I GGNCC 4 cut(s) 130, 343, 963, 1027
CpoI CGGWCCG 1 cut(s) 343
Csp6I GTAC 5 cut(s) 656, 764, 873, 1068, 1516
CspI CGGWCCG 1 cut(s) 343
CviAII CATG 9 cut(s) 43, 1091, 1127, 1136, 1201, 1274, 1352, 1538, 1604
CviQI GTAC 5 cut(s) 656, 764, 873, 1068, 1516
DdeI CTNAG 4 cut(s) 35, 954, 1185, 1466
DpnI GATC 5 cut(s) 978, 987, 1044, 1089, 1258
DpnII GATC 5 cut(s) 976, 985, 1042, 1087, 1256
EaeI YGGCCR 3 cut(s) 452, 482, 1612
Eam1104I CTCTTC 1 cut(s) 1143
EarI CTCTTC 1 cut(s) 1143
Ecl136II GAGCTC 3 cut(s) 350, 410, 1449
Eco130I CCWWGG 2 cut(s) 23, 42
Eco147I AGGCCT 1 cut(s) 1117
Eco24I GRGCYC 3 cut(s) 352, 412, 1451
Eco47I GGWCC 3 cut(s) 343, 963, 1027
Eco53kI GAGCTC 3 cut(s) 350, 410, 1449
Eco57I CTGAAG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 879
EcoICRI GAGCTC 3 cut(s) 350, 410, 1449
EcoRII CCWGG 9 cut(s) 162, 180, 198, 216, 234, 667, 1058, 1117, 1543
EcoT14I CCWWGG 2 cut(s) 23, 42
EcoT38I GRGCYC 3 cut(s) 352, 412, 1451
ErhI CCWWGG 2 cut(s) 23, 42
FaeI CATG 9 cut(s) 46, 1094, 1130, 1139, 1204, 1277, 1355, 1541, 1607
FaqI GGGAC 4 cut(s) 128, 530, 905, 1093
FatI CATG 9 cut(s) 42, 1090, 1126, 1135, 1200, 1273, 1351, 1537, 1603
FauI CCCGC 2 cut(s) 250, 930
FbaI TGATCA 2 cut(s) 985, 1042
FokI GGATG 5 cut(s) 559, 598, 628, 670, 1595
FriOI GRGCYC 3 cut(s) 352, 412, 1451
FspBI CTAG 5 cut(s) 299, 458, 549, 888, 1566
GsaI CCCAGC 3 cut(s) 215, 470, 581
GsuI CTGGAG 3 cut(s) 504, 739, 1092
HaeIII GGCC 7 cut(s) 131, 295, 454, 484, 1117, 1317, 1614
HapII CCGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
Hin1II CATG 9 cut(s) 46, 1094, 1130, 1139, 1204, 1277, 1355, 1541, 1607
HinfI GANTC 9 cut(s) 70, 994, 1074, 1094, 1106, 1181, 1348, 1355, 1587
HpaII CCGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
HphI GGTGA 4 cut(s) 1150, 1235, 1415, 1526
Hpy166II GTNNAC 2 cut(s) 1516, 1552
Hpy188I TCNGA 7 cut(s) 347, 407, 739, 1180, 1186, 1360, 1467
Hpy188III TCNNGA 7 cut(s) 756, 881, 1091, 1103, 1309, 1352, 1597
Hpy8I GTNNAC 2 cut(s) 1516, 1552
HpyAV CCTTC 5 cut(s) 102, 216, 1078, 1388, 1405
HpyCH4III ACNGT 7 cut(s) 274, 919, 1021, 1342, 1458, 1523, 1622
HpyCH4IV ACGT 1 cut(s) 1282
HpyF10VI GCNNNNNNNGC 8 cut(s) 227, 236, 347, 371, 431, 521, 1136, 1374
HpyF3I CTNAG 4 cut(s) 35, 954, 1185, 1466
HpySE526I ACGT 1 cut(s) 1282
Hsp92II CATG 9 cut(s) 46, 1094, 1130, 1139, 1204, 1277, 1355, 1541, 1607
Ksp22I TGATCA 2 cut(s) 985, 1042
Kzo9I GATC 5 cut(s) 976, 985, 1042, 1087, 1256
LweI GCATC 3 cut(s) 14, 569, 620
MaeI CTAG 5 cut(s) 299, 458, 549, 888, 1566
MaeII ACGT 1 cut(s) 1282
MaeIII GTNAC 4 cut(s) 268, 721, 896, 1421
MalI GATC 5 cut(s) 978, 987, 1044, 1089, 1258
MbiI CCGCTC 1 cut(s) 421
MboI GATC 5 cut(s) 976, 985, 1042, 1087, 1256
MboII GAAGA 3 cut(s) 1027, 1160, 1177
MfeI CAATTG 1 cut(s) 630
MhlI GDGCHC 4 cut(s) 352, 412, 1451, 1554
MluCI AATT 3 cut(s) 630, 807, 1434
MlyI GAGTC 5 cut(s) 64, 1083, 1088, 1115, 1357
MmeI TCCRAC 6 cut(s) 377, 407, 437, 467, 497, 762
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 4 cut(s) 959, 1008, 1437, 1624
MslI CAYNNNNRTG 1 cut(s) 1608
MspA1I CMGCKG 2 cut(s) 341, 800
MspI CCGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 9 cut(s) 164, 182, 200, 218, 236, 669, 1060, 1119, 1545
MwoI GCNNNNNNNGC 8 cut(s) 227, 236, 347, 371, 431, 521, 1136, 1374
NciI CCSGG 7 cut(s) 56, 86, 104, 116, 128, 146, 248
NcoI CCATGG 1 cut(s) 42
NdeII GATC 5 cut(s) 976, 985, 1042, 1087, 1256
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 9 cut(s) 46, 1094, 1130, 1139, 1204, 1277, 1355, 1541, 1607
NmuCI GTSAC 2 cut(s) 721, 1421
PagI TCATGA 2 cut(s) 1090, 1351
PaqCI CACCTGC 1 cut(s) 1211
PceI AGGCCT 1 cut(s) 1117
PctI GAATGC 1 cut(s) 1291
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 4 cut(s) 994, 1181, 1355, 1587
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 667
PleI GAGTC 5 cut(s) 64, 1082, 1088, 1114, 1356
PpsI GAGTC 5 cut(s) 64, 1082, 1088, 1114, 1356
PshAI GACNNNNGTC 1 cut(s) 1419
Psp124BI GAGCTC 3 cut(s) 352, 412, 1451
Psp6I CCWGG 9 cut(s) 162, 180, 198, 216, 234, 667, 1058, 1117, 1543
PspFI CCCAGC 3 cut(s) 211, 466, 577
PspGI CCWGG 9 cut(s) 162, 180, 198, 216, 234, 667, 1058, 1117, 1543
PspPI GGNCC 4 cut(s) 130, 343, 963, 1027
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstI CTGCAG 3 cut(s) 229, 799, 976
PstNI CAGNNNCTG 1 cut(s) 1527
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 5 cut(s) 657, 765, 874, 1069, 1517
RsaNI GTAC 5 cut(s) 656, 764, 873, 1068, 1516
RseI CAYNNNNRTG 1 cut(s) 1608
Rsr2I CGGWCCG 1 cut(s) 343
RsrII CGGWCCG 1 cut(s) 343
SacI GAGCTC 3 cut(s) 352, 412, 1451
SaqAI TTAA 4 cut(s) 959, 1008, 1437, 1624
Sau3AI GATC 5 cut(s) 976, 985, 1042, 1087, 1256
Sau96I GGNCC 4 cut(s) 130, 343, 963, 1027
ScaI AGTACT 2 cut(s) 874, 1069
SchI GAGTC 5 cut(s) 64, 1083, 1088, 1115, 1357
SduI GDGCHC 4 cut(s) 352, 412, 1451, 1554
SfaNI GCATC 3 cut(s) 14, 569, 620
SfcI CTRYAG 4 cut(s) 225, 795, 972, 1369
SinI GGWCC 3 cut(s) 343, 963, 1027
SmiMI CAYNNNNRTG 1 cut(s) 1608
SpeI ACTAGT 1 cut(s) 457
Sse9I AATT 3 cut(s) 630, 807, 1434
SseBI AGGCCT 1 cut(s) 1117
SsiI CCGC 7 cut(s) 243, 296, 341, 392, 419, 645, 923
SspMI CTAG 5 cut(s) 299, 458, 549, 888, 1566
SstI GAGCTC 3 cut(s) 352, 412, 1451
StuI AGGCCT 1 cut(s) 1117
StyI CCWWGG 2 cut(s) 23, 42
TaaI ACNGT 7 cut(s) 274, 919, 1021, 1342, 1458, 1523, 1622
TaiI ACGT 1 cut(s) 1285
TaqI TCGA 4 cut(s) 31, 280, 1255, 1590
TasI AATT 3 cut(s) 630, 807, 1434
TatI WGTACW 3 cut(s) 872, 1067, 1515
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 4 cut(s) 994, 1181, 1355, 1587
Tru1I TTAA 4 cut(s) 959, 1008, 1437, 1624
Tru9I TTAA 4 cut(s) 959, 1008, 1437, 1624
TscAI CASTG 4 cut(s) 738, 819, 976, 1461
TseFI GTSAC 2 cut(s) 721, 1421
Tsp45I GTSAC 2 cut(s) 721, 1421
TspDTI ATGAA 5 cut(s) 639, 852, 1368, 1424, 1461
TspRI CASTG 4 cut(s) 738, 819, 976, 1461
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 1550
VpaK11BI GGWCC 3 cut(s) 343, 963, 1027
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 5 cut(s) 299, 458, 549, 888, 1566
ZrmI AGTACT 2 cut(s) 874, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.