Rh1CG275100

Vegetative cell wall protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
54215809 .. 54217980
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG275100.1

Sequence Viewer

Length: 1629 bp
ATGGCATCACAACCTACTCGTCCTTGGTTTCGACTAAGCTCCATGGTGCGGCCAGCCCCGGCACCAACCCCGACTCCTGCACCAGCCCCGGCTCCTTCCCCAACCCCGGCTCCCTCCCCGGCACCAACCCCGGCCCCTGCACCAGTCCCGGCTCCTGCACCAGCCCTGGCTCCTGCACCAACCCTGGCTCCTGCACCAGCCCTGGCTCCTTCCCCAGCCCTGGCTCCTGCAGCAGCCCAGGCACCCGCCCCGGCACCAACCCTTGCCCCTGTAACTGTGGTTCGACCTACATTGAGGCCGCTAGCTCCTCCTCCTCCTGTTGAACCCACTCCACCAGCAGCAGCGGTCCGAGCTCCAACTCTGCCAGCACCAGCAGCCCCAACTCCAACTCCACCGCCACAAGAGTTCCGAGCTCCAACTCCGCTCGCACCAGCAGCCCTAACTCCAACTCCACGGCCACTAGTAGCCCCAGCTCCAACTCCACGGCCATCTGCTGTGGCACCCCCACCGATTGCTGCTGCTCCAGCACCACCACCACCTCTGGCTGTCCCTAGTTCTACTGCATCTGTTCCATCATCCCCAGCTCGTGGCGTTAGTTTTGCTCCCTCAATAGCATCCCCTCCTGCAACTGCAATTGCCATCACATCCGCTTCATCAGTACCATCATCTCCTGGAAAGGTAGCCCCATCCTCTACATCAGGGGTGCCATCTCCTAAAAGTAGGGTCACTACTTCAGTGTCCGACTATCCAGCTACCTCCAGAGCAGTACCACCACCACAGACTTCTCCACCAAAACCTGCAGCTGCTACAATTTCAGTGCCACGACAAACTTATTCTCCACCTAAACCCAGAAGCACAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCAAGTTACATTCCACCTAAACCTACTGTCCCGCCACCCTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAAGGATTCCATTAGAGGTTAAGCAGAAGACGGTGCTGGTCCAAAAGACCATTGATCAAAAGCCGACTTCCTGGTTCAGTACTGGAGTCTCAAAGAAGGATCATGACTCTACTCGTGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACCAAGAAGAAGTTATCATCTGATTCTGAGGAGGCTCCAAGCATGAGGGTTATTACTCTTGTAGGTGATAACAAAGGGGCTTATATGGAACTCATTCGATCCCCTAATAAACAACATGAGCAACGTGGGGAGCATTCTTATTATCTTTTCAAGAAAGGCCACAATGGTAAGTCGGCACAGACAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGCAGCAGTAGTGGCGAGGAAGGTAAGCCAAAAATGAAGGACAAAAGTCACCATAAAGGAATTAAGGCAGGGAGCTCATCACTGTTGCCTCTGAGTTCATTCACAAACAGCAATGTTCAAGGTATCAACAACTCCATTGTGTACAACAGTTCCTGCACTCACCATGACCCAGGCGTGCACCTTTCTCTCACTAGGAAGCCCAATGGGGATGGATTCGATGTCAAGAACCATGTCAATGGCCGACACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

542

Amino Acids

55.87

Weight (kDa)

10.24

Isoelectric Point (pI)

79.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 6 cut(s) 61, 121, 241, 253, 499, 703
AccB7I CCANNNNNTGG 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 424
AciI CCGC 8 cut(s) 49, 246, 299, 344, 395, 422, 648, 926
AclWI GGATC 2 cut(s) 1098, 1254
AcoI YGGCCR 4 cut(s) 50, 455, 485, 1615
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 5 cut(s) 660, 768, 877, 1072, 1520
AfiI CCNNNNNNNGG 4 cut(s) 48, 106, 220, 587
AgsI TTSAA 3 cut(s) 323, 1312, 1496
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 9 cut(s) 165, 183, 201, 219, 237, 670, 1061, 1120, 1546
Alw21I GWGCWC 4 cut(s) 355, 415, 1454, 1557
Alw26I GTCTC 1 cut(s) 1084
Alw44I GTGCAC 1 cut(s) 1553
AlwI GGATC 2 cut(s) 1098, 1254
AlwNI CAGNNNCTG 1 cut(s) 1530
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 8 cut(s) 50, 132, 296, 455, 485, 1118, 1318, 1615
ApaLI GTGCAC 1 cut(s) 1553
Asp700I GAANNNNTTC 1 cut(s) 1254
AspS9I GGNCC 4 cut(s) 133, 346, 966, 1030
AsuC2I CCSGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
AsuHPI GGTGA 4 cut(s) 1153, 1238, 1418, 1529
AsuNHI GCTAGC 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 882
AvaII GGWCC 3 cut(s) 346, 966, 1030
BaeGI GKGCMC 1 cut(s) 1557
BanI GGYRCC 6 cut(s) 61, 121, 241, 253, 499, 703
BanII GRGCYC 3 cut(s) 355, 415, 1454
BauI CACGAG 2 cut(s) 585, 1104
BbsI GAAGAC 1 cut(s) 1025
Bbv12I GWGCWC 4 cut(s) 355, 415, 1454, 1557
BccI CCATC 8 cut(s) 496, 580, 647, 670, 694, 715, 961, 1580
BceAI ACGGC 2 cut(s) 470, 500
BciT130I CCWGG 9 cut(s) 167, 185, 203, 221, 239, 672, 1063, 1122, 1548
BclI TGATCA 2 cut(s) 988, 1045
BcnI CCSGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
BcoDI GTCTC 1 cut(s) 1084
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 5 cut(s) 302, 461, 552, 891, 1569
BfmI CTRYAG 4 cut(s) 228, 798, 975, 1372
BfuAI ACCTGC 1 cut(s) 805
BmcAI AGTACT 2 cut(s) 877, 1072
Bme18I GGWCC 3 cut(s) 346, 966, 1030
BmeT110I CYCGRG 1 cut(s) 882
BmgT120I GGNCC 4 cut(s) 133, 346, 966, 1030
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 3 cut(s) 14, 572, 623
BmtI GCTAGC 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 867
BoxI GACNNNNGTC 1 cut(s) 1422
BpiI GAAGAC 1 cut(s) 1025
BpmI CTGGAG 3 cut(s) 507, 742, 1095
BpuMI CCSGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 106, 220, 587
Bse1I ACTGG 3 cut(s) 143, 873, 1078
Bse3DI GCAATG 1 cut(s) 1495
BseBI CCWGG 9 cut(s) 167, 185, 203, 221, 239, 672, 1063, 1122, 1548
BseGI GGATG 5 cut(s) 575, 614, 644, 686, 1591
BseLI CCNNNNNNNGG 4 cut(s) 48, 106, 220, 587
BseMI GCAATG 1 cut(s) 1495
BseMII CTCAG 3 cut(s) 971, 1179, 1460
BseNI ACTGG 3 cut(s) 143, 873, 1078
BseRI GAGGAG 5 cut(s) 297, 300, 303, 927, 1205
BseSI GKGCMC 1 cut(s) 1557
BseYI CCCAGC 3 cut(s) 214, 469, 580
BsgI GTGCAG 6 cut(s) 63, 123, 141, 159, 177, 1516
BshFI GGCC 8 cut(s) 52, 134, 298, 457, 487, 1120, 1320, 1617
BshNI GGYRCC 6 cut(s) 61, 121, 241, 253, 499, 703
BsiHKAI GWGCWC 4 cut(s) 355, 415, 1454, 1557
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
BslFI GGGAC 4 cut(s) 131, 533, 908, 1096
BslI CCNNNNNNNGG 4 cut(s) 48, 106, 220, 587
BsmAI GTCTC 1 cut(s) 1084
BsmFI GGGAC 4 cut(s) 131, 533, 908, 1096
BsmI GAATGC 1 cut(s) 1294
BsnI GGCC 8 cut(s) 52, 134, 298, 457, 487, 1120, 1320, 1617
BsoBI CYCGRG 1 cut(s) 882
Bsp1286I GDGCHC 4 cut(s) 355, 415, 1454, 1557
Bsp1407I TGTACA 1 cut(s) 1518
Bsp143I GATC 5 cut(s) 979, 988, 1045, 1090, 1259
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 8 cut(s) 49, 246, 299, 344, 395, 422, 648, 926
BspANI GGCC 8 cut(s) 52, 134, 298, 457, 487, 1120, 1320, 1617
BspCNI CTCAG 3 cut(s) 970, 1180, 1461
BspHI TCATGA 2 cut(s) 1093, 1354
BspMAI CTGCAG 3 cut(s) 232, 802, 979
BspMI ACCTGC 1 cut(s) 805
BspOI GCTAGC 1 cut(s) 305
BspPI GGATC 2 cut(s) 1098, 1254
BspT107I GGYRCC 6 cut(s) 61, 121, 241, 253, 499, 703
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 1495
BsrGI TGTACA 1 cut(s) 1518
BsrI ACTGG 3 cut(s) 143, 873, 1078
BssMI GATC 5 cut(s) 979, 988, 1045, 1090, 1259
BssSI CACGAG 2 cut(s) 585, 1104
BssT1I CCWWGG 2 cut(s) 23, 42
Bst2BI CACGAG 2 cut(s) 585, 1104
Bst2UI CCWGG 9 cut(s) 167, 185, 203, 221, 239, 672, 1063, 1122, 1548
Bst4CI ACNGT 7 cut(s) 277, 922, 1024, 1345, 1461, 1526, 1625
Bst6I CTCTTC 1 cut(s) 1146
BstAUI TGTACA 1 cut(s) 1518
BstC8I GCNNGC 5 cut(s) 54, 303, 366, 426, 1553
BstDEI CTNAG 4 cut(s) 35, 957, 1188, 1469
BstDSI CCRYGG 3 cut(s) 42, 452, 482
BstF5I GGATG 5 cut(s) 575, 614, 644, 686, 1591
BstKTI GATC 5 cut(s) 982, 991, 1048, 1093, 1262
BstMAI GTCTC 1 cut(s) 1084
BstMBI GATC 5 cut(s) 979, 988, 1045, 1090, 1259
BstMWI GCNNNNNNNGC 9 cut(s) 230, 239, 350, 374, 434, 524, 1139, 1377, 1389
BstNI CCWGG 9 cut(s) 167, 185, 203, 221, 239, 672, 1063, 1122, 1548
BstPAI GACNNNNGTC 1 cut(s) 1422
BstSFI CTRYAG 4 cut(s) 228, 798, 975, 1372
BstSLI GKGCMC 1 cut(s) 1557
BstV2I GAAGAC 1 cut(s) 1025
BstXI CCANNNNNNTGG 2 cut(s) 1121, 1613
BsuRI GGCC 8 cut(s) 52, 134, 298, 457, 487, 1120, 1320, 1617
BtgI CCRYGG 3 cut(s) 42, 452, 482
BtsCI GGATG 5 cut(s) 575, 614, 644, 686, 1591
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 4 cut(s) 741, 822, 972, 1457
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 5 cut(s) 54, 303, 366, 426, 1553
CaiI CAGNNNCTG 1 cut(s) 1530
CciI TCATGA 2 cut(s) 1093, 1354
Cfr13I GGNCC 4 cut(s) 133, 346, 966, 1030
CpoI CGGWCCG 1 cut(s) 346
Csp6I GTAC 5 cut(s) 659, 767, 876, 1071, 1519
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 9 cut(s) 43, 1094, 1130, 1139, 1204, 1277, 1355, 1541, 1607
CviQI GTAC 5 cut(s) 659, 767, 876, 1071, 1519
DdeI CTNAG 4 cut(s) 35, 957, 1188, 1469
DpnI GATC 5 cut(s) 981, 990, 1047, 1092, 1261
DpnII GATC 5 cut(s) 979, 988, 1045, 1090, 1259
EaeI YGGCCR 4 cut(s) 50, 455, 485, 1615
Eam1104I CTCTTC 1 cut(s) 1146
EarI CTCTTC 1 cut(s) 1146
Ecl136II GAGCTC 3 cut(s) 353, 413, 1452
Eco130I CCWWGG 2 cut(s) 23, 42
Eco147I AGGCCT 1 cut(s) 1120
Eco24I GRGCYC 3 cut(s) 355, 415, 1454
Eco47I GGWCC 3 cut(s) 346, 966, 1030
Eco53kI GAGCTC 3 cut(s) 353, 413, 1452
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 882
EcoICRI GAGCTC 3 cut(s) 353, 413, 1452
EcoRII CCWGG 9 cut(s) 165, 183, 201, 219, 237, 670, 1061, 1120, 1546
EcoT14I CCWWGG 2 cut(s) 23, 42
EcoT38I GRGCYC 3 cut(s) 355, 415, 1454
ErhI CCWWGG 2 cut(s) 23, 42
FaeI CATG 9 cut(s) 46, 1097, 1133, 1142, 1207, 1280, 1358, 1544, 1610
FaqI GGGAC 4 cut(s) 131, 533, 908, 1096
FatI CATG 9 cut(s) 42, 1093, 1129, 1138, 1203, 1276, 1354, 1540, 1606
FauI CCCGC 2 cut(s) 253, 933
FbaI TGATCA 2 cut(s) 988, 1045
FokI GGATG 5 cut(s) 562, 601, 631, 673, 1598
FriOI GRGCYC 3 cut(s) 355, 415, 1454
FspBI CTAG 5 cut(s) 302, 461, 552, 891, 1569
GsaI CCCAGC 3 cut(s) 218, 473, 584
GsuI CTGGAG 3 cut(s) 507, 742, 1095
HaeIII GGCC 8 cut(s) 52, 134, 298, 457, 487, 1120, 1320, 1617
HapII CCGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
Hin1II CATG 9 cut(s) 46, 1097, 1133, 1142, 1207, 1280, 1358, 1544, 1610
HinfI GANTC 9 cut(s) 73, 997, 1077, 1097, 1109, 1184, 1351, 1358, 1590
HpaII CCGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
HphI GGTGA 4 cut(s) 1153, 1238, 1418, 1529
Hpy166II GTNNAC 2 cut(s) 1519, 1555
Hpy188I TCNGA 7 cut(s) 350, 410, 742, 1183, 1189, 1363, 1470
Hpy188III TCNNGA 7 cut(s) 759, 884, 1094, 1106, 1312, 1355, 1600
Hpy8I GTNNAC 2 cut(s) 1519, 1555
HpyAV CCTTC 5 cut(s) 105, 219, 1081, 1391, 1408
HpyCH4III ACNGT 7 cut(s) 277, 922, 1024, 1345, 1461, 1526, 1625
HpyCH4IV ACGT 1 cut(s) 1285
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 239, 350, 374, 434, 524, 1139, 1377, 1389
HpyF3I CTNAG 4 cut(s) 35, 957, 1188, 1469
HpySE526I ACGT 1 cut(s) 1285
Hsp92II CATG 9 cut(s) 46, 1097, 1133, 1142, 1207, 1280, 1358, 1544, 1610
Ksp22I TGATCA 2 cut(s) 988, 1045
Kzo9I GATC 5 cut(s) 979, 988, 1045, 1090, 1259
LweI GCATC 3 cut(s) 14, 572, 623
MaeI CTAG 5 cut(s) 302, 461, 552, 891, 1569
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 4 cut(s) 271, 724, 899, 1424
MalI GATC 5 cut(s) 981, 990, 1047, 1092, 1261
MbiI CCGCTC 1 cut(s) 424
MboI GATC 5 cut(s) 979, 988, 1045, 1090, 1259
MboII GAAGA 3 cut(s) 1030, 1163, 1180
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 4 cut(s) 355, 415, 1454, 1557
MluCI AATT 3 cut(s) 633, 810, 1437
MlyI GAGTC 5 cut(s) 67, 1086, 1091, 1118, 1360
MmeI TCCRAC 6 cut(s) 380, 410, 440, 470, 500, 765
MroXI GAANNNNTTC 1 cut(s) 1254
MseI TTAA 4 cut(s) 962, 1011, 1440, 1627
MslI CAYNNNNRTG 1 cut(s) 1611
MspA1I CMGCKG 2 cut(s) 344, 803
MspI CCGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 1294
MvaI CCWGG 9 cut(s) 167, 185, 203, 221, 239, 672, 1063, 1122, 1548
MwoI GCNNNNNNNGC 9 cut(s) 230, 239, 350, 374, 434, 524, 1139, 1377, 1389
NciI CCSGG 7 cut(s) 59, 89, 107, 119, 131, 149, 251
NcoI CCATGG 1 cut(s) 42
NdeII GATC 5 cut(s) 979, 988, 1045, 1090, 1259
NheI GCTAGC 1 cut(s) 301
NlaIII CATG 9 cut(s) 46, 1097, 1133, 1142, 1207, 1280, 1358, 1544, 1610
NmuCI GTSAC 2 cut(s) 724, 1424
PagI TCATGA 2 cut(s) 1093, 1354
PceI AGGCCT 1 cut(s) 1120
PctI GAATGC 1 cut(s) 1294
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 4 cut(s) 997, 1184, 1358, 1590
PflMI CCANNNNNTGG 1 cut(s) 587
PfoI TCCNGGA 1 cut(s) 670
PleI GAGTC 5 cut(s) 67, 1085, 1091, 1117, 1359
PpsI GAGTC 5 cut(s) 67, 1085, 1091, 1117, 1359
PshAI GACNNNNGTC 1 cut(s) 1422
Psp124BI GAGCTC 3 cut(s) 355, 415, 1454
Psp6I CCWGG 9 cut(s) 165, 183, 201, 219, 237, 670, 1061, 1120, 1546
PspFI CCCAGC 3 cut(s) 214, 469, 580
PspGI CCWGG 9 cut(s) 165, 183, 201, 219, 237, 670, 1061, 1120, 1546
PspPI GGNCC 4 cut(s) 133, 346, 966, 1030
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PstI CTGCAG 3 cut(s) 232, 802, 979
PstNI CAGNNNCTG 1 cut(s) 1530
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 5 cut(s) 660, 768, 877, 1072, 1520
RsaNI GTAC 5 cut(s) 659, 767, 876, 1071, 1519
RseI CAYNNNNRTG 1 cut(s) 1611
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SacI GAGCTC 3 cut(s) 355, 415, 1454
SaqAI TTAA 4 cut(s) 962, 1011, 1440, 1627
Sau3AI GATC 5 cut(s) 979, 988, 1045, 1090, 1259
Sau96I GGNCC 4 cut(s) 133, 346, 966, 1030
ScaI AGTACT 2 cut(s) 877, 1072
SchI GAGTC 5 cut(s) 67, 1086, 1091, 1118, 1360
SduI GDGCHC 4 cut(s) 355, 415, 1454, 1557
SfaNI GCATC 3 cut(s) 14, 572, 623
SfcI CTRYAG 4 cut(s) 228, 798, 975, 1372
SinI GGWCC 3 cut(s) 346, 966, 1030
SmiMI CAYNNNNRTG 1 cut(s) 1611
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 3 cut(s) 633, 810, 1437
SseBI AGGCCT 1 cut(s) 1120
SsiI CCGC 8 cut(s) 49, 246, 299, 344, 395, 422, 648, 926
SspMI CTAG 5 cut(s) 302, 461, 552, 891, 1569
SstI GAGCTC 3 cut(s) 355, 415, 1454
StuI AGGCCT 1 cut(s) 1120
StyI CCWWGG 2 cut(s) 23, 42
TaaI ACNGT 7 cut(s) 277, 922, 1024, 1345, 1461, 1526, 1625
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 4 cut(s) 31, 283, 1258, 1593
TasI AATT 3 cut(s) 633, 810, 1437
TatI WGTACW 3 cut(s) 875, 1070, 1518
TauI GCSGC 2 cut(s) 52, 301
TfiI GAWTC 4 cut(s) 997, 1184, 1358, 1590
Tru1I TTAA 4 cut(s) 962, 1011, 1440, 1627
Tru9I TTAA 4 cut(s) 962, 1011, 1440, 1627
TscAI CASTG 4 cut(s) 741, 822, 979, 1464
TseFI GTSAC 2 cut(s) 724, 1424
Tsp45I GTSAC 2 cut(s) 724, 1424
TspDTI ATGAA 5 cut(s) 642, 855, 1371, 1427, 1464
TspRI CASTG 4 cut(s) 741, 822, 979, 1464
Van91I CCANNNNNTGG 1 cut(s) 587
VneI GTGCAC 1 cut(s) 1553
VpaK11BI GGWCC 3 cut(s) 346, 966, 1030
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 5 cut(s) 302, 461, 552, 891, 1569
ZrmI AGTACT 2 cut(s) 877, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.