Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007445

Physical Location & Seq

Genomic Coordinates Reverse (-)

19293829 .. 19295901

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAATTTTCAGGGCAATGATGATCCAAAAGATGACTGTCGAAGTCTCAGTTCACTATTTGTATTTGCTATTGTTTGGAAGAGTGGTGTCAAACCCAAGACCAGCTAGCTGCCTTGATCATAAGTGGAAGCTTTTTGATGCATTTAATTATACGTGTAATGCTGCAGATGTCTACGATGATCTTATATCCCGTAGAGTTATTCTAGTGATGCTGAGAAATTTGCAGAAGAATGTCCTTGATGTACTGGTTGTGGATTGGGTCGTGGGTTTAATATCTTTCTTGTTTCTTTGTGGAGCCATGTACGTTGGTCTTGTGATTTTGGCTGGAGGATACAAAATCCGGTCATTAAAGAGCACACTGAAAGGTCCTACTGTGCCTATGTATCTCATTCAAAGCGCAAAACACTTCCTTTTATTACTGTTGAAGAAGAGCATAGAAAAGTTGCTAGAGATAACAGATGCAGCCATGGAGAGGAACATGAAGAGATTTATGTTTTCTGATCCACTGATGTTGGTGGCATTGAAAAAACACACTGATTCTGTAACAGTGGGAAAGAAAAAGGTGTATTGCTGCATTGGGTTTTGGTATGCCACTGATGTTTTATCAGTGTGGATTGCCCCAATAGCACCTACAATAGAGGGCACTGATTCTTCATTAGTGGCTAATGCAAATAGCCACTGTTATCAGTGTGTATTGGGACAAAAGGGACTAATTCCTATTGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

243

Amino Acids

27.29

Weight (kDa)

9.27

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46630
fragaria_vesca	FvH4_4g01200 FvH4_4g01200 FvH4_7g17260
prunus_persica	Prupe.2G193900_v2.0.a1
pyrus_communis	pycom07g15240
rosa_chinensis	RchiOBHm_Chr1g0360631 RchiOBHm_Chr3g0484701
rosa_laevigata	RLG00000023206 RLG00000027793
rosa_multiflora	Rmu_sc0001910.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295940 Rroxscaffold_6G00397490
rosa_rugosa	Rorug01G0280500 Rorug03G0213600
rosa_samantha	Rh1AG292400 Rh1BG257300 Rh1CG275100 Rh1DG287200 Rh3AG263800 Rh3BG298900 Rh3CG296400 Rh3DG292500
rosa_wichuraiana	Rw1G025890 Rw3G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AclWI	GGATC	2 cut(s)	19, 497
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	246, 305
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	395, 427, 526
AluBI	AGCT	3 cut(s)	107, 111, 133
AluI	AGCT	3 cut(s)	107, 111, 133
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	19, 497
ApeKI	GCWGC	4 cut(s)	111, 164, 464, 573
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	98, 151, 476, 560
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	3 cut(s)	108, 206, 449
BfmI	CTRYAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	4 cut(s)	112, 165, 465, 574
BlsI	GCNGC	4 cut(s)	113, 166, 466, 575
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	3 cut(s)	130, 201, 451
BmtI	GCTAGC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	63, 206
BseNI	ACTGG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	4 cut(s)	98, 151, 476, 560
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	714, 723
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	714, 723
Bsp1286I	GDGCHC	2 cut(s)	359, 647
Bsp143I	GATC	4 cut(s)	24, 118, 181, 502
Bsp19I	CCATGG	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	62, 207
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	2 cut(s)	19, 497
BspQI	GCTCTTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	4 cut(s)	24, 118, 181, 502
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	5 cut(s)	40, 376, 423, 550, 683
Bst6I	CTCTTC	3 cut(s)	76, 425, 479
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	49, 215
BstDSI	CCRYGG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	27, 121, 184, 505
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	4 cut(s)	24, 118, 181, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	647
BstV1I	GCAGC	4 cut(s)	98, 151, 476, 560
BsuI	GTATCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	468
BtsIMutI	CAGTG	9 cut(s)	359, 506, 534, 555, 594, 615, 645, 679, 695
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	245, 304
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	3 cut(s)	301, 469, 481
CviJI	RGCY	8 cut(s)	107, 111, 133, 299, 326, 467, 665, 678
CviKI_1	RGCY	8 cut(s)	107, 111, 133, 299, 326, 467, 665, 678
CviQI	GTAC	2 cut(s)	245, 304
DdeI	CTNAG	2 cut(s)	49, 215
DpnI	GATC	4 cut(s)	26, 120, 183, 504
DpnII	GATC	4 cut(s)	24, 118, 181, 502
Eam1104I	CTCTTC	3 cut(s)	76, 425, 479
EarI	CTCTTC	3 cut(s)	76, 425, 479
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	304, 472, 484
FaqI	GGGAC	2 cut(s)	714, 723
FatI	CATG	3 cut(s)	300, 468, 480
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	112, 165, 465, 574
Fsp4HI	GCNGC	4 cut(s)	112, 165, 465, 574
FspBI	CTAG	3 cut(s)	108, 206, 449
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	4 cut(s)	112, 165, 465, 574
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	3 cut(s)	304, 472, 484
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	539, 650
HpaII	CCGG	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	55, 175
Hpy188I	TCNGA	1 cut(s)	502
Hpy8I	GTNNAC	2 cut(s)	55, 175
HpyCH4III	ACNGT	5 cut(s)	40, 376, 423, 550, 683
HpyCH4IV	ACGT	2 cut(s)	155, 306
HpyCH4V	TGCA	6 cut(s)	143, 167, 226, 464, 576, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	2 cut(s)	49, 215
HpySE526I	ACGT	2 cut(s)	155, 306
Hsp92II	CATG	3 cut(s)	304, 472, 484
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	24, 118, 181, 502
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	4 cut(s)	117, 233, 312, 356
Lsp1109I	GCAGC	4 cut(s)	98, 151, 476, 560
LweI	GCATC	3 cut(s)	130, 201, 451
MaeI	CTAG	3 cut(s)	108, 206, 449
MaeII	ACGT	2 cut(s)	155, 306
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	4 cut(s)	26, 120, 183, 504
MboI	GATC	4 cut(s)	24, 118, 181, 502
MboII	GAAGA	6 cut(s)	93, 241, 439, 442, 496, 645
MhlI	GDGCHC	2 cut(s)	359, 647
MluCI	AATT	4 cut(s)	6, 148, 220, 714
MnlI	CCTC	3 cut(s)	323, 468, 634
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	3 cut(s)	147, 272, 350
MspI	CCGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	4 cut(s)	24, 118, 181, 502
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	304, 472, 484
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	539, 650
PkrI	GCNGC	4 cut(s)	113, 166, 466, 575
Ppu21I	YACGTR	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	368
PspPPI	RGGWCCY	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	246, 305
RsaNI	GTAC	2 cut(s)	245, 304
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	147, 272, 350
SatI	GCNGC	4 cut(s)	112, 165, 465, 574
Sau3AI	GATC	4 cut(s)	24, 118, 181, 502
Sau96I	GGNCC	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	359, 647
SetI	ASST	8 cut(s)	109, 113, 135, 158, 309, 370, 567, 634
SfaNI	GCATC	3 cut(s)	130, 201, 451
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	6, 148, 220, 714
SspMI	CTAG	3 cut(s)	108, 206, 449
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	5 cut(s)	40, 376, 423, 550, 683
TaiI	ACGT	2 cut(s)	158, 309
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	6, 148, 220, 714
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	539, 650
Tru1I	TTAA	3 cut(s)	147, 272, 350
Tru9I	TTAA	3 cut(s)	147, 272, 350
TscAI	CASTG	9 cut(s)	366, 513, 541, 555, 601, 615, 652, 686, 695
TseI	GCWGC	4 cut(s)	111, 164, 464, 573
TspDTI	ATGAA	2 cut(s)	497, 645
TspRI	CASTG	9 cut(s)	366, 513, 541, 555, 601, 615, 652, 686, 695
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	3 cut(s)	108, 206, 449
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.