Rroxscaffold_6G00397490

Vegetative cell wall protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
19181305 .. 19182884
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397490.1

Sequence Viewer

Length: 1551 bp
ATGGCATCACAACCTACTCGTCCTTGGTTTCGACTAAGCTCCATGGTGCGGCCAGCCCCGGCACCAACCCCAGCTCCTGCACCAGCCCCGGCTCCTACACCAGCCCCAGCTCTTGCACCAACCCCGGCACCAACCCCTGCCCCTGCACCCACCCCGGCACCAACCCCTGCCCCTGCACCCACCCCGGCACCAACCCCTGCCCCTGCACCTGTGGTTCGACCTACATTGAGGCCGCTAGCTTCTCTTCCTCCTATTGAACCCACTCCACCACCACCAGCGGTCCGAGCTCCAACTCCGCCAGCACCAGCAGCCCCAACTCCAACTCCACCGCCACCAGCGGTCCGAGCTCCAACTCCGCCCGCACTAGCAGCCCCAACTCCAACTCCAACTCCACGGCCACTAGCAGCCCCAACTCCAACTCCACGGCCATCTGCTGTGGCACCCCCGGTTGCTACTGCATCTGTTCCATCGTCCCCAGCTCGTGGCGTTAGTTCTGCTCCCTCAGCAGCATCCCCTCCTGCAACTGCAATTGCCATCACAACCTCTTCATCAGTACCATCATCTCCTGGAAAGGTAGCCCCATCCTCTACATCAGGGGTGCCATCTCCTAGAAGCAGGGTCACTACTTCAGTGTCCGACTATACAGCTACCTCCAGAGCAGTACCACCACCACAAACTTCTCCTCCAAAACCCGCAGCTGCTACAATTTCAGTGCCACAACAAACTTATTCTCCGCCTAAACCCAGAAGCACAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCCAGTTACATTCCGCCTCCCAGAACCCTTAAGCCGCAGGCCAAACCTACTGCCCCGCCACCCTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAAGGATTCCATTAGAGGCTGAGCAGAAGACGGTGCTGGTCCAAAGGACCATTGATCAAAAGCCGACTTCCTGGTTCAGTACTGGAGTCTCAAAGCAGGATCATGACTCTACTCGTGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACCAAGAAGAAGTTATCATCTGATTCTGAGGAGGCTTCAGGCATGAGGGTCATAACTCTTGCAGGTGATAACAAAGGGGCTTTTATGGAACTCATGCGATCCCCTAATAAACATCATGAGCAACGTGGGGAGCATTCTCATTATCTTTTCAAGAAAGGCCACAATGGTAAGTCAGCACAGACAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGCAGCAGCAGCGGCGGCGAGGAAGGCAAGCCAAAAATGAAGGACAAAAGTCACCACAAAGGAATTAAGGCAGGGAGCTCATCACAGCTGCCTCTGAGTTCATTCACAAACAGCAACGTTCAAGGTATCAACAACTCCATTGTGTACAACAGTTCCTGCACTCACCATGACCCGGGCGTGCACCTTGCTCTCACTAGGAAGCCCAATGGGGATGGATTCGATGTCAAGAGCCATGTCAATGGCCGCCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

516

Amino Acids

53.38

Weight (kDa)

10.35

Isoelectric Point (pI)

74.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1133
Acc36I ACCTGC 1 cut(s) 1133
AccB1I GGYRCC 6 cut(s) 61, 127, 157, 187, 439, 598
AccB7I CCANNNNNTGG 1 cut(s) 482
AclI AACGTT 1 cut(s) 1413
AclWI GGATC 2 cut(s) 1017, 1173
AcoI YGGCCR 4 cut(s) 50, 395, 425, 1537
AcuI CTGAAG 2 cut(s) 612, 1101
AfaI GTAC 5 cut(s) 555, 663, 772, 991, 1442
AfiI CCNNNNNNNGG 3 cut(s) 48, 482, 1468
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 3 cut(s) 257, 1231, 1418
AjnI CCWGG 3 cut(s) 565, 980, 1039
Alw21I GWGCWC 4 cut(s) 289, 349, 1376, 1479
Alw26I GTCTC 1 cut(s) 1003
Alw44I GTGCAC 1 cut(s) 1475
AlwI GGATC 2 cut(s) 1017, 1173
AlwNI CAGNNNCTG 2 cut(s) 77, 1452
Ama87I CYCGRG 2 cut(s) 777, 1468
AoxI GGCC 8 cut(s) 50, 230, 395, 425, 828, 1037, 1237, 1537
ApaLI GTGCAC 1 cut(s) 1475
AspS9I GGNCC 5 cut(s) 280, 340, 885, 949, 957
AsuC2I CCSGG 8 cut(s) 59, 89, 125, 155, 185, 446, 1469, 1470
AsuHPI GGTGA 4 cut(s) 1072, 1157, 1340, 1451
AsuNHI GCTAGC 1 cut(s) 235
AvaI CYCGRG 2 cut(s) 777, 1468
AvaII GGWCC 5 cut(s) 280, 340, 885, 949, 957
BaeGI GKGCMC 1 cut(s) 1479
BanI GGYRCC 6 cut(s) 61, 127, 157, 187, 439, 598
BanII GRGCYC 3 cut(s) 289, 349, 1376
BauI CACGAG 2 cut(s) 480, 1023
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 4 cut(s) 289, 349, 1376, 1479
BbvCI CCTCAGC 1 cut(s) 502
BccI CCATC 8 cut(s) 436, 475, 542, 565, 589, 610, 880, 1502
BceAI ACGGC 2 cut(s) 410, 440
BciT130I CCWGG 3 cut(s) 567, 982, 1041
BclI TGATCA 2 cut(s) 907, 964
BcnI CCSGG 8 cut(s) 59, 89, 125, 155, 185, 446, 1469, 1470
BcoDI GTCTC 1 cut(s) 1003
BfaI CTAG 6 cut(s) 236, 365, 401, 609, 786, 1491
BfmI CTRYAG 2 cut(s) 894, 1291
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 1133
BlpI GCTNAGC 1 cut(s) 930
BmcAI AGTACT 2 cut(s) 772, 991
Bme18I GGWCC 5 cut(s) 280, 340, 885, 949, 957
BmeT110I CYCGRG 2 cut(s) 777, 1468
BmgT120I GGNCC 5 cut(s) 280, 340, 885, 949, 957
BmiI GGNNCC 8 cut(s) 63, 93, 129, 159, 189, 441, 600, 783
BmrI ACTGGG 2 cut(s) 762, 786
BmsI GCATC 3 cut(s) 14, 467, 518
BmtI GCTAGC 1 cut(s) 239
BmuI ACTGGG 2 cut(s) 762, 786
BoxI GACNNNNGTC 1 cut(s) 1344
BpiI GAAGAC 1 cut(s) 944
BpmI CTGGAG 2 cut(s) 637, 1014
Bpu10I CCTNAGC 1 cut(s) 502
Bpu1102I GCTNAGC 1 cut(s) 930
BpuMI CCSGG 8 cut(s) 59, 89, 125, 155, 185, 446, 1469, 1470
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 482, 1468
Bse1I ACTGG 3 cut(s) 768, 792, 997
BseBI CCWGG 3 cut(s) 567, 982, 1041
BseGI GGATG 3 cut(s) 509, 581, 1513
BseLI CCNNNNNNNGG 3 cut(s) 48, 482, 1468
BseMII CTCAG 5 cut(s) 516, 890, 921, 1098, 1382
BseNI ACTGG 3 cut(s) 768, 792, 997
BseRI GAGGAG 3 cut(s) 672, 846, 1124
BseSI GKGCMC 1 cut(s) 1479
BseYI CCCAGC 3 cut(s) 70, 106, 475
BsgI GTGCAG 5 cut(s) 63, 129, 159, 189, 1438
BshFI GGCC 8 cut(s) 52, 232, 397, 427, 830, 1039, 1239, 1539
BshNI GGYRCC 6 cut(s) 61, 127, 157, 187, 439, 598
BsiHKAI GWGCWC 4 cut(s) 289, 349, 1376, 1479
BsiHKCI CYCGRG 2 cut(s) 777, 1468
BsiSI CCGG 7 cut(s) 59, 89, 125, 155, 185, 446, 1469
BslFI GGGAC 3 cut(s) 457, 774, 1015
BslI CCNNNNNNNGG 3 cut(s) 48, 482, 1468
BsmAI GTCTC 1 cut(s) 1003
BsmFI GGGAC 3 cut(s) 457, 774, 1015
BsmI GAATGC 1 cut(s) 1213
BsnI GGCC 8 cut(s) 52, 232, 397, 427, 830, 1039, 1239, 1539
BsoBI CYCGRG 2 cut(s) 777, 1468
Bsp1286I GDGCHC 4 cut(s) 289, 349, 1376, 1479
Bsp1407I TGTACA 1 cut(s) 1440
Bsp143I GATC 5 cut(s) 898, 907, 964, 1009, 1178
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 8 cut(s) 52, 232, 397, 427, 830, 1039, 1239, 1539
BspCNI CTCAG 5 cut(s) 515, 889, 922, 1099, 1383
BspHI TCATGA 3 cut(s) 1012, 1195, 1273
BspLI GGNNCC 8 cut(s) 63, 93, 129, 159, 189, 441, 600, 783
BspMAI CTGCAG 1 cut(s) 898
BspMI ACCTGC 1 cut(s) 1133
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 2 cut(s) 1017, 1173
BspT107I GGYRCC 6 cut(s) 61, 127, 157, 187, 439, 598
BspTI CTTAAG 1 cut(s) 818
BsrGI TGTACA 1 cut(s) 1440
BsrI ACTGG 3 cut(s) 768, 792, 997
BssMI GATC 5 cut(s) 898, 907, 964, 1009, 1178
BssSI CACGAG 2 cut(s) 480, 1023
BssT1I CCWWGG 2 cut(s) 23, 42
Bst2BI CACGAG 2 cut(s) 480, 1023
Bst2UI CCWGG 3 cut(s) 567, 982, 1041
Bst4CI ACNGT 4 cut(s) 943, 1264, 1448, 1547
Bst6I CTCTTC 3 cut(s) 249, 550, 1065
BstAFI CTTAAG 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 1440
BstC8I GCNNGC 7 cut(s) 54, 237, 300, 360, 828, 1325, 1475
BstDEI CTNAG 6 cut(s) 35, 502, 876, 930, 1107, 1391
BstDSI CCRYGG 3 cut(s) 42, 392, 422
BstF5I GGATG 3 cut(s) 509, 581, 1513
BstKTI GATC 5 cut(s) 901, 910, 967, 1012, 1181
BstMAI GTCTC 1 cut(s) 1003
BstMBI GATC 5 cut(s) 898, 907, 964, 1009, 1178
BstNI CCWGG 3 cut(s) 567, 982, 1041
BstPAI GACNNNNGTC 1 cut(s) 1344
BstSFI CTRYAG 2 cut(s) 894, 1291
BstSLI GKGCMC 1 cut(s) 1479
BstV2I GAAGAC 1 cut(s) 944
BstXI CCANNNNNNTGG 2 cut(s) 1040, 1535
BsuRI GGCC 8 cut(s) 52, 232, 397, 427, 830, 1039, 1239, 1539
BtgI CCRYGG 3 cut(s) 42, 392, 422
BtsCI GGATG 3 cut(s) 509, 581, 1513
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 636, 717, 891
BveI ACCTGC 1 cut(s) 1133
Cac8I GCNNGC 7 cut(s) 54, 237, 300, 360, 828, 1325, 1475
CaiI CAGNNNCTG 2 cut(s) 77, 1452
CciI TCATGA 3 cut(s) 1012, 1195, 1273
Cfr13I GGNCC 5 cut(s) 280, 340, 885, 949, 957
Cfr9I CCCGGG 1 cut(s) 1468
CpoI CGGWCCG 2 cut(s) 280, 340
Csp6I GTAC 5 cut(s) 554, 662, 771, 990, 1441
CspI CGGWCCG 2 cut(s) 280, 340
CviQI GTAC 5 cut(s) 554, 662, 771, 990, 1441
DdeI CTNAG 6 cut(s) 35, 502, 876, 930, 1107, 1391
DpnI GATC 5 cut(s) 900, 909, 966, 1011, 1180
DpnII GATC 5 cut(s) 898, 907, 964, 1009, 1178
EaeI YGGCCR 4 cut(s) 50, 395, 425, 1537
Eam1104I CTCTTC 3 cut(s) 249, 550, 1065
EarI CTCTTC 3 cut(s) 249, 550, 1065
EciI GGCGGA 4 cut(s) 285, 345, 723, 792
Ecl136II GAGCTC 3 cut(s) 287, 347, 1374
Eco130I CCWWGG 2 cut(s) 23, 42
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 3 cut(s) 289, 349, 1376
Eco47I GGWCC 5 cut(s) 280, 340, 885, 949, 957
Eco53kI GAGCTC 3 cut(s) 287, 347, 1374
Eco57I CTGAAG 2 cut(s) 612, 1101
Eco88I CYCGRG 2 cut(s) 777, 1468
EcoICRI GAGCTC 3 cut(s) 287, 347, 1374
EcoRII CCWGG 3 cut(s) 565, 980, 1039
EcoT14I CCWWGG 2 cut(s) 23, 42
EcoT38I GRGCYC 3 cut(s) 289, 349, 1376
ErhI CCWWGG 2 cut(s) 23, 42
FaqI GGGAC 3 cut(s) 457, 774, 1015
FauI CCCGC 3 cut(s) 367, 700, 852
FbaI TGATCA 2 cut(s) 907, 964
FokI GGATG 3 cut(s) 496, 568, 1520
FriOI GRGCYC 3 cut(s) 289, 349, 1376
FspBI CTAG 6 cut(s) 236, 365, 401, 609, 786, 1491
GsaI CCCAGC 3 cut(s) 74, 110, 479
GsuI CTGGAG 2 cut(s) 637, 1014
HaeIII GGCC 8 cut(s) 52, 232, 397, 427, 830, 1039, 1239, 1539
HapII CCGG 7 cut(s) 59, 89, 125, 155, 185, 446, 1469
HinfI GANTC 8 cut(s) 916, 996, 1016, 1028, 1103, 1270, 1277, 1512
HpaII CCGG 7 cut(s) 59, 89, 125, 155, 185, 446, 1469
HphI GGTGA 4 cut(s) 1072, 1157, 1340, 1451
Hpy166II GTNNAC 2 cut(s) 1441, 1477
Hpy188I TCNGA 7 cut(s) 284, 344, 637, 1102, 1108, 1282, 1392
Hpy188III TCNNGA 8 cut(s) 654, 779, 1013, 1025, 1196, 1231, 1274, 1522
Hpy8I GTNNAC 2 cut(s) 1441, 1477
HpyAV CCTTC 2 cut(s) 1313, 1330
HpyCH4III ACNGT 4 cut(s) 943, 1264, 1448, 1547
HpyCH4IV ACGT 2 cut(s) 1204, 1413
HpyF3I CTNAG 6 cut(s) 35, 502, 876, 930, 1107, 1391
HpySE526I ACGT 2 cut(s) 1204, 1413
Ksp22I TGATCA 2 cut(s) 907, 964
Kzo9I GATC 5 cut(s) 898, 907, 964, 1009, 1178
LmnI GCTCC 9 cut(s) 44, 79, 97, 292, 352, 502, 781, 1210, 1371
LweI GCATC 3 cut(s) 14, 467, 518
MaeI CTAG 6 cut(s) 236, 365, 401, 609, 786, 1491
MaeII ACGT 2 cut(s) 1204, 1413
MaeIII GTNAC 3 cut(s) 619, 794, 1346
MalI GATC 5 cut(s) 900, 909, 966, 1011, 1180
MboI GATC 5 cut(s) 898, 907, 964, 1009, 1178
MboII GAAGA 5 cut(s) 236, 537, 949, 1082, 1099
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 4 cut(s) 289, 349, 1376, 1479
MluCI AATT 3 cut(s) 528, 705, 1359
MlyI GAGTC 4 cut(s) 1005, 1010, 1037, 1279
MmeI TCCRAC 7 cut(s) 314, 344, 374, 404, 410, 440, 660
MseI TTAA 4 cut(s) 819, 881, 1362, 1549
MslI CAYNNNNRTG 1 cut(s) 1533
MspA1I CMGCKG 5 cut(s) 278, 338, 698, 1308, 1384
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 7 cut(s) 59, 89, 125, 155, 185, 446, 1469
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 1213
MvaI CCWGG 3 cut(s) 567, 982, 1041
NciI CCSGG 8 cut(s) 59, 89, 125, 155, 185, 446, 1469, 1470
NcoI CCATGG 1 cut(s) 42
NdeII GATC 5 cut(s) 898, 907, 964, 1009, 1178
NheI GCTAGC 1 cut(s) 235
NlaIV GGNNCC 8 cut(s) 63, 93, 129, 159, 189, 441, 600, 783
NmuCI GTSAC 2 cut(s) 619, 1346
PagI TCATGA 3 cut(s) 1012, 1195, 1273
PaqCI CACCTGC 1 cut(s) 1133
PceI AGGCCT 1 cut(s) 1039
PctI GAATGC 1 cut(s) 1213
PfeI GAWTC 4 cut(s) 916, 1103, 1277, 1512
PflMI CCANNNNNTGG 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 565
PleI GAGTC 4 cut(s) 1004, 1010, 1036, 1278
PpsI GAGTC 4 cut(s) 1004, 1010, 1036, 1278
PshAI GACNNNNGTC 1 cut(s) 1344
Psp124BI GAGCTC 3 cut(s) 289, 349, 1376
Psp1406I AACGTT 1 cut(s) 1413
Psp6I CCWGG 3 cut(s) 565, 980, 1039
PspFI CCCAGC 3 cut(s) 70, 106, 475
PspGI CCWGG 3 cut(s) 565, 980, 1039
PspN4I GGNNCC 8 cut(s) 63, 93, 129, 159, 189, 441, 600, 783
PspPI GGNCC 5 cut(s) 280, 340, 885, 949, 957
PstI CTGCAG 1 cut(s) 898
PstNI CAGNNNCTG 2 cut(s) 77, 1452
PvuII CAGCTG 2 cut(s) 698, 1384
RsaI GTAC 5 cut(s) 555, 663, 772, 991, 1442
RsaNI GTAC 5 cut(s) 554, 662, 771, 990, 1441
RseI CAYNNNNRTG 1 cut(s) 1533
Rsr2I CGGWCCG 2 cut(s) 280, 340
RsrII CGGWCCG 2 cut(s) 280, 340
SacI GAGCTC 3 cut(s) 289, 349, 1376
SaqAI TTAA 4 cut(s) 819, 881, 1362, 1549
Sau3AI GATC 5 cut(s) 898, 907, 964, 1009, 1178
Sau96I GGNCC 5 cut(s) 280, 340, 885, 949, 957
ScaI AGTACT 2 cut(s) 772, 991
SchI GAGTC 4 cut(s) 1005, 1010, 1037, 1279
SduI GDGCHC 4 cut(s) 289, 349, 1376, 1479
SfaNI GCATC 3 cut(s) 14, 467, 518
SfcI CTRYAG 2 cut(s) 894, 1291
SinI GGWCC 5 cut(s) 280, 340, 885, 949, 957
SmaI CCCGGG 1 cut(s) 1470
SmiMI CAYNNNNRTG 1 cut(s) 1533
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 3 cut(s) 528, 705, 1359
SseBI AGGCCT 1 cut(s) 1039
SspMI CTAG 6 cut(s) 236, 365, 401, 609, 786, 1491
SstI GAGCTC 3 cut(s) 289, 349, 1376
StuI AGGCCT 1 cut(s) 1039
StyI CCWWGG 2 cut(s) 23, 42
TaaI ACNGT 4 cut(s) 943, 1264, 1448, 1547
TaiI ACGT 2 cut(s) 1207, 1416
TaqI TCGA 3 cut(s) 31, 217, 1515
TasI AATT 3 cut(s) 528, 705, 1359
TatI WGTACW 3 cut(s) 770, 989, 1440
TauI GCSGC 6 cut(s) 52, 235, 826, 1311, 1314, 1542
TfiI GAWTC 4 cut(s) 916, 1103, 1277, 1512
Tru1I TTAA 4 cut(s) 819, 881, 1362, 1549
Tru9I TTAA 4 cut(s) 819, 881, 1362, 1549
TscAI CASTG 3 cut(s) 636, 717, 898
TseFI GTSAC 2 cut(s) 619, 1346
Tsp45I GTSAC 2 cut(s) 619, 1346
TspDTI ATGAA 5 cut(s) 537, 750, 1290, 1349, 1386
TspMI CCCGGG 1 cut(s) 1468
TspRI CASTG 3 cut(s) 636, 717, 898
Van91I CCANNNNNTGG 1 cut(s) 482
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 1475
VpaK11BI GGWCC 5 cut(s) 280, 340, 885, 949, 957
XmaI CCCGGG 1 cut(s) 1468
XspI CTAG 6 cut(s) 236, 365, 401, 609, 786, 1491
ZrmI AGTACT 2 cut(s) 772, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.