Rh1AG292400

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007445
Physical Location & Seq
Forward (+)
52234833 .. 52237621
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG292400.1

Sequence Viewer

Length: 1059 bp
ATGAAGACAGGCAAAAGTGAAAGTGGTAGCAGCATCTCAAGCCGCAGGAAGCAAAGTCAAGAGGAAGACACAGACATTAGCGGGGTGCCATCTCCTAGAAGCAGGGTCATTACTTCAGTGTCCGACTATCCAGGTACCTCCAGAGCAGTACCACCACCACAGACTTCTCCACCAAAACCCATAGCTGCTACAATTTCAGTGCCACGACAAACTTATTCTCCACCTAAACCCAGAAGCATAACCATTTCATTACCCAGTACTGCTCGGGAGCCTAGTCCCAGTTACATTCCACCTACCAGAACCCTTAAGCCGGTGAATAATACCCCACCTCAGTCGCCTAGCAGGCCCAAACCTACTGCCCCGCCACCTTCTCCTCTCAAACTGCCACCATCTCAGTTAAGGTCCAGCACTGCAGATCAAACTGATCAAAGGATTCCATTAGAGGCTGAGCAGAAGACGGTGCTGTTCCAAAAGACCACTGATCAAAAGCCGACTTCCTGGTTCAATACTGGAGTCTCAAAGCAGGATCATGACTCTACTCGTGAGTCCCAAAGGCCTGGCAATCATGCCCACCATGCAAAGCAGGAAGAGAAAATCACTAAGAAGAAGTTATCATCTGATTCTGAGGAGACTCCAGGCATGAGGGTTATAACTCTTGCAGGTGATAACAAAGGGGCTTATATGGAACTCATTCGATCCCCTAATAAACATCATGAGCAACGTGGGGAGCATTCTCATTATCTTTTCAAGAAAGGCCACAATGGTAAGTCGGCACAGACAGTTGGGAGTCATGAATCTGATAAAAGCTACAGCAGTAGTGGTGAGGAAGGCAAGCCAAAAATGAAGGACAAAAGTCACCACAAAGGAATTAAGGCAGGGAGCTCATCACTGCTGCCCCTGAGTTCATTCACAAACAGCAATGTTCAAGGTATCAACAACTCCATTATGTACAACAGTTCCTGCACTCACCACGACCCAGGCGTGCACCTTGCTCTCACTAGGAAGCCCAATGGGGATGGATTCGATGTCAAAAGCCATGTCAATGGGCAACACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.34

Weight (kDa)

9.82

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AarI CACCTGC 1 cut(s) 650
Acc36I ACCTGC 1 cut(s) 650
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 85, 134
AciI CCGC 3 cut(s) 43, 81, 362
AclWI GGATC 2 cut(s) 534, 690
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 4 cut(s) 136, 150, 259, 950
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 505, 748, 926
AjnI CCWGG 5 cut(s) 130, 497, 556, 634, 976
AluBI AGCT 3 cut(s) 185, 807, 882
AluI AGCT 3 cut(s) 185, 807, 882
Alw21I GWGCWC 2 cut(s) 884, 987
Alw26I GTCTC 2 cut(s) 520, 623
Alw44I GTGCAC 1 cut(s) 983
AlwI GGATC 2 cut(s) 534, 690
AlwNI CAGNNNCTG 1 cut(s) 960
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 3 cut(s) 344, 554, 754
ApaLI GTGCAC 1 cut(s) 983
ApeKI GCWGC 3 cut(s) 30, 185, 892
ArsI GACNNNNNNTTYG 2 cut(s) 1023, 1055
Asp700I GAANNNNTTC 1 cut(s) 690
Asp718I GGTACC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 345, 402
AsuHPI GGTGA 5 cut(s) 325, 674, 833, 848, 959
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 987
BanI GGYRCC 2 cut(s) 85, 134
BanII GRGCYC 1 cut(s) 884
BauI CACGAG 1 cut(s) 540
BbsI GAAGAC 3 cut(s) 11, 72, 461
Bbv12I GWGCWC 2 cut(s) 884, 987
BbvI GCAGC 3 cut(s) 42, 172, 879
BccI CCATC 3 cut(s) 97, 397, 1010
BciT130I CCWGG 5 cut(s) 132, 499, 558, 636, 978
BclI TGATCA 2 cut(s) 424, 481
BcoDI GTCTC 2 cut(s) 520, 623
BfaI CTAG 4 cut(s) 96, 273, 339, 999
BfmI CTRYAG 2 cut(s) 411, 808
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 343
BisI GCNGC 4 cut(s) 31, 43, 186, 893
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 4 cut(s) 32, 44, 187, 894
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 5 cut(s) 132, 499, 558, 636, 978
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 345, 402
BmiI GGNNCC 3 cut(s) 87, 136, 270
BmrFI CCNGG 5 cut(s) 132, 499, 558, 636, 978
BmrI ACTGGG 2 cut(s) 249, 273
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 2 cut(s) 249, 273
BoxI GACNNNNGTC 1 cut(s) 852
BpiI GAAGAC 3 cut(s) 11, 72, 461
BpmI CTGGAG 3 cut(s) 124, 531, 618
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 976
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 255, 279, 514
Bse3DI GCAATG 1 cut(s) 925
BseBI CCWGG 5 cut(s) 132, 499, 558, 636, 978
BseDI CCNNGG 1 cut(s) 976
BseGI GGATG 1 cut(s) 1021
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 5 cut(s) 344, 407, 438, 615, 890
BseNI ACTGG 3 cut(s) 255, 279, 514
BseRI GAGGAG 2 cut(s) 363, 641
BseSI GKGCMC 1 cut(s) 987
BseXI GCAGC 3 cut(s) 42, 172, 879
BsgI GTGCAG 1 cut(s) 946
BshFI GGCC 3 cut(s) 346, 556, 756
BshNI GGYRCC 2 cut(s) 85, 134
BsiHKAI GWGCWC 2 cut(s) 884, 987
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 261, 532
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 520, 623
BsmFI GGGAC 2 cut(s) 261, 532
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 3 cut(s) 346, 556, 756
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 884, 987
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 5 cut(s) 415, 424, 481, 526, 695
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 3 cut(s) 43, 81, 362
BspANI GGCC 3 cut(s) 346, 556, 756
BspCNI CTCAG 5 cut(s) 343, 406, 439, 616, 891
BspHI TCATGA 3 cut(s) 529, 712, 790
BspLI GGNNCC 3 cut(s) 87, 136, 270
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 2 cut(s) 534, 690
BspT107I GGYRCC 2 cut(s) 85, 134
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 3 cut(s) 255, 279, 514
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 976
BssMI GATC 5 cut(s) 415, 424, 481, 526, 695
BssSI CACGAG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 540
Bst2UI CCWGG 5 cut(s) 132, 499, 558, 636, 978
Bst4CI ACNGT 4 cut(s) 460, 781, 956, 1055
Bst6I CTCTTC 1 cut(s) 582
BstAFI CTTAAG 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 948
BstC8I GCNNGC 3 cut(s) 344, 833, 983
BstDEI CTNAG 6 cut(s) 330, 393, 447, 600, 624, 899
BstF5I GGATG 1 cut(s) 1021
BstKTI GATC 5 cut(s) 418, 427, 484, 529, 698
BstMAI GTCTC 2 cut(s) 520, 623
BstMBI GATC 5 cut(s) 415, 424, 481, 526, 695
BstMWI GCNNNNNNNGC 3 cut(s) 39, 343, 575
BstNI CCWGG 5 cut(s) 132, 499, 558, 636, 978
BstPAI GACNNNNGTC 1 cut(s) 852
BstSCI CCNGG 5 cut(s) 130, 497, 556, 634, 976
BstSFI CTRYAG 2 cut(s) 411, 808
BstSLI GKGCMC 1 cut(s) 987
BstV1I GCAGC 3 cut(s) 42, 172, 879
BstV2I GAAGAC 3 cut(s) 11, 72, 461
BstXI CCANNNNNNTGG 2 cut(s) 557, 1043
BsuRI GGCC 3 cut(s) 346, 556, 756
BtsCI GGATG 1 cut(s) 1021
BtsI GCAGTG 2 cut(s) 408, 887
BtsIMutI CAGTG 5 cut(s) 123, 204, 408, 477, 887
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 3 cut(s) 344, 833, 983
CaiI CAGNNNCTG 1 cut(s) 960
CciI TCATGA 3 cut(s) 529, 712, 790
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 345, 402
Csp6I GTAC 4 cut(s) 135, 149, 258, 949
CviAII CATG 7 cut(s) 530, 566, 575, 640, 713, 791, 1037
CviQI GTAC 4 cut(s) 135, 149, 258, 949
DdeI CTNAG 6 cut(s) 330, 393, 447, 600, 624, 899
DpnI GATC 5 cut(s) 417, 426, 483, 528, 697
DpnII GATC 5 cut(s) 415, 424, 481, 526, 695
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 882
Eco147I AGGCCT 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 882
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 882
EcoRII CCWGG 5 cut(s) 130, 497, 556, 634, 976
EcoT38I GRGCYC 1 cut(s) 884
FaeI CATG 7 cut(s) 533, 569, 578, 643, 716, 794, 1040
FaqI GGGAC 2 cut(s) 261, 532
FatI CATG 7 cut(s) 529, 565, 574, 639, 712, 790, 1036
FauI CCCGC 2 cut(s) 74, 369
FbaI TGATCA 2 cut(s) 424, 481
Fnu4HI GCNGC 4 cut(s) 31, 43, 186, 893
FokI GGATG 1 cut(s) 1028
FriOI GRGCYC 1 cut(s) 884
Fsp4HI GCNGC 4 cut(s) 31, 43, 186, 893
FspBI CTAG 4 cut(s) 96, 273, 339, 999
GluI GCNGC 4 cut(s) 31, 43, 186, 893
GsuI CTGGAG 3 cut(s) 124, 531, 618
HaeIII GGCC 3 cut(s) 346, 556, 756
HapII CCGG 1 cut(s) 311
Hin1II CATG 7 cut(s) 533, 569, 578, 643, 716, 794, 1040
HinfI GANTC 9 cut(s) 433, 513, 533, 545, 620, 631, 787, 794, 1020
HpaII CCGG 1 cut(s) 311
HphI GGTGA 5 cut(s) 325, 674, 833, 848, 959
Hpy166II GTNNAC 1 cut(s) 985
Hpy188I TCNGA 4 cut(s) 124, 619, 625, 799
Hpy188III TCNNGA 8 cut(s) 59, 141, 266, 530, 542, 713, 748, 791
Hpy8I GTNNAC 1 cut(s) 985
HpyAV CCTTC 3 cut(s) 378, 821, 838
HpyCH4III ACNGT 4 cut(s) 460, 781, 956, 1055
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 5 cut(s) 413, 578, 659, 963, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 343, 575
HpyF3I CTNAG 6 cut(s) 330, 393, 447, 600, 624, 899
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 7 cut(s) 533, 569, 578, 643, 716, 794, 1040
KpnI GGTACC 1 cut(s) 138
Ksp22I TGATCA 2 cut(s) 424, 481
Kzo9I GATC 5 cut(s) 415, 424, 481, 526, 695
LmnI GCTCC 3 cut(s) 268, 727, 879
Lsp1109I GCAGC 3 cut(s) 42, 172, 879
LweI GCATC 1 cut(s) 42
MaeI CTAG 4 cut(s) 96, 273, 339, 999
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 2 cut(s) 281, 854
MalI GATC 5 cut(s) 417, 426, 483, 528, 697
MboI GATC 5 cut(s) 415, 424, 481, 526, 695
MboII GAAGA 5 cut(s) 16, 77, 466, 599, 616
MhlI GDGCHC 2 cut(s) 884, 987
MluCI AATT 2 cut(s) 192, 867
MlyI GAGTC 5 cut(s) 522, 527, 554, 625, 796
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 8 cut(s) 55, 148, 339, 384, 436, 619, 636, 817
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 4 cut(s) 306, 398, 870, 1057
MslI CAYNNNNRTG 1 cut(s) 1041
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 5 cut(s) 132, 499, 558, 636, 978
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 5 cut(s) 132, 499, 558, 636, 978
MwoI GCNNNNNNNGC 3 cut(s) 39, 343, 575
NdeII GATC 5 cut(s) 415, 424, 481, 526, 695
NlaIII CATG 7 cut(s) 533, 569, 578, 643, 716, 794, 1040
NlaIV GGNNCC 3 cut(s) 87, 136, 270
NmuCI GTSAC 1 cut(s) 854
PagI TCATGA 3 cut(s) 529, 712, 790
PaqCI CACCTGC 1 cut(s) 650
PceI AGGCCT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 978
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 433, 620, 794, 1020
PkrI GCNGC 4 cut(s) 32, 44, 187, 894
PleI GAGTC 5 cut(s) 521, 527, 553, 625, 795
PpsI GAGTC 5 cut(s) 521, 527, 553, 625, 795
PshAI GACNNNNGTC 1 cut(s) 852
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 884
Psp6I CCWGG 5 cut(s) 130, 497, 556, 634, 976
PspGI CCWGG 5 cut(s) 130, 497, 556, 634, 976
PspN4I GGNNCC 3 cut(s) 87, 136, 270
PspPI GGNCC 2 cut(s) 345, 402
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 960
RsaI GTAC 4 cut(s) 136, 150, 259, 950
RsaNI GTAC 4 cut(s) 135, 149, 258, 949
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 1 cut(s) 884
SaqAI TTAA 4 cut(s) 306, 398, 870, 1057
SatI GCNGC 4 cut(s) 31, 43, 186, 893
Sau3AI GATC 5 cut(s) 415, 424, 481, 526, 695
Sau96I GGNCC 2 cut(s) 345, 402
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 5 cut(s) 522, 527, 554, 625, 796
ScrFI CCNGG 5 cut(s) 132, 499, 558, 636, 978
SduI GDGCHC 2 cut(s) 884, 987
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 2 cut(s) 411, 808
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 37, 305
SmoI CTYRAG 2 cut(s) 37, 305
Sse9I AATT 2 cut(s) 192, 867
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 3 cut(s) 43, 81, 362
SspMI CTAG 4 cut(s) 96, 273, 339, 999
SstI GAGCTC 1 cut(s) 884
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 5 cut(s) 130, 497, 556, 634, 976
TaaI ACNGT 4 cut(s) 460, 781, 956, 1055
TaiI ACGT 1 cut(s) 724
TaqI TCGA 2 cut(s) 694, 1023
TasI AATT 2 cut(s) 192, 867
TatI WGTACW 2 cut(s) 257, 948
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 4 cut(s) 433, 620, 794, 1020
Tru1I TTAA 4 cut(s) 306, 398, 870, 1057
Tru9I TTAA 4 cut(s) 306, 398, 870, 1057
TscAI CASTG 5 cut(s) 123, 204, 415, 484, 894
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 3 cut(s) 30, 185, 892
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 5 cut(s) 17, 237, 807, 857, 894
TspRI CASTG 5 cut(s) 123, 204, 415, 484, 894
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 983
VpaK11BI GGWCC 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 4 cut(s) 96, 273, 339, 999
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.