pycom07g15240

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007445
Physical Location & Seq
Forward (+)
17406582 .. 17408009
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15240.1

Sequence Viewer

Length: 1428 bp
ATGGCATCCCAACCTTCTCGTCCGTGGTTCCGGCTGGGCTCCTTTGTCCGTCCGGTCAGCAGTCTAGCCCCTGCCCCAACTCCTGCGTCCGCCCCCGCCCCCATGGTTATACCTTCAATGAGGCCAATGGCTCCTGCTCCTGAGCCTACTCCTCCACCTACCACCACTGCTCTTCCACCGCCCCCTCCTCCTGCCGCAGTGGCACCACCTGACGCCATTGCTCCACCGTCACCACTACCGCCTGCAGCTACTCCATCACCTCCCCCTCCTCCTCGTGTGACTACTTCATCAGTTCCGTCATCACCAGTAAACAAAGCATCAGTTCCGTCATCACCAGTAAACAAAGCTGCATCTTCTTCAGTGCCATCATCCCCTGCAACCAGGGTTTCTGGAGCCCCATCATATTCAGGGGTACCTTCTCCTACTAGAACCAAAGCCACTACTATTTCCACTACTACTTCAGTGCCAAATTCTCCAGCTAACAAACTACAAACTCCCAGCACTTCTCCGCCAAAACCTGCCATCTCCGCTACAAATTCTCCTCCATCTTATAAACCACTCCCACCACACACTTATTCTCCACCAAAACCCACCACCATTTCATCCACTGCTAGGGAGGCTAATAATTACAACAACCAATCTCCCAAAACCATCGGGTCGGCCGTTAATCAAACCCCACCTCAGTCACCAAAGCTCAAACAAACCGCCCCACCGCCATCTCCTCACACTCTTCCACTATCTCAGCTAAGGCCAAACACTTCAGATAATCAAACTGACCAACCCAAGTTTCCCATTGAGGCGGAGAAGACAGTGCTGGTCCAACAGAAAACCATTGATCAACAGAAACCCAATTCATGGTTCAGCAGCTTCACCTCCGGAAACTCGAAGGGCGCAGACTTTCGCGAGTACCCGAAGCCTAGCAATAACTCCCTCAGCTCAAAAAACGAAGAAGAAACAAAAGAGAGACTCATATCTCACAAGAAGTCTCCGTCTAGTTCCGATCACGAGGCAGCTGGCATGAGGGTTATCACCGTTGCAGGGGAAAATAGAGGAGCGCTCATGGAACTCATAAAATCTCCAAAGAAACATGGAAGTGGGGAGCACTCTCATTACATTCACAAGAAGGGCAATGGAAAAACCCTAATGGGGAATCAATCTGATCAGAGCAGCTACAGAAGCAGCAGCGACAGTGGCGGCGAAGAAGGCAAGCACAAAAGCAAAGATAAAAGTCACAGAGCAGGGAAAGCTGCAGCATCAAAGCCTACAAGTGCCTTCATGAACAGCAATGTTCAAGGAATCAACAACTCCATTGTATACAACAGTTCTCTCACTCACCATGATCCTGGGGTCCACCAAGCTTTCTCCAGGAAGCCCAACGGAGCAGGGTTTGAGGCCAAGAGCCACCATGCCAATGGCCGCAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

49.78

Weight (kDa)

10.12

Isoelectric Point (pI)

68.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 526
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 202, 412
AccB7I CCANNNNNTGG 1 cut(s) 855
AccI GTMKAC 1 cut(s) 1314
AccII CGCG 1 cut(s) 903
AccIII TCCGGA 1 cut(s) 875
AclWI GGATC 1 cut(s) 1334
AcoI YGGCCR 2 cut(s) 660, 1414
AcsI RAATTY 2 cut(s) 469, 535
AcuI CTGAAG 3 cut(s) 342, 444, 744
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 414, 908
AfeI AGCGCT 1 cut(s) 1056
AfiI CCNNNNNNNGG 4 cut(s) 612, 855, 1038, 1146
AgsI TTSAA 2 cut(s) 117, 1292
AjnI CCWGG 3 cut(s) 380, 1342, 1364
AjuI GAANNNNNNNTTGG 4 cut(s) 771, 803, 842, 874
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 2 cut(s) 958, 990
AlwI GGATC 1 cut(s) 1334
Aor13HI TCCGGA 1 cut(s) 875
Aor51HI AGCGCT 1 cut(s) 1056
AoxI GGCC 5 cut(s) 122, 660, 749, 1392, 1414
ApeKI GCWGC 9 cut(s) 245, 347, 864, 1010, 1167, 1179, 1182, 1247, 1250
ApoI RAATTY 2 cut(s) 469, 535
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 2 cut(s) 893, 1057
AspS9I GGNCC 2 cut(s) 817, 1348
AsuHPI GGTGA 8 cut(s) 222, 249, 294, 324, 678, 862, 1021, 1325
AvaII GGWCC 2 cut(s) 817, 1348
BanI GGYRCC 2 cut(s) 202, 412
BanII GRGCYC 2 cut(s) 41, 397
BauI CACGAG 2 cut(s) 273, 1004
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 1 cut(s) 1104
BbvCI CCTCAGC 1 cut(s) 932
BbvI GCAGC 9 cut(s) 257, 334, 876, 1022, 1179, 1191, 1194, 1234, 1262
BccI CCATC 7 cut(s) 262, 373, 406, 530, 553, 659, 724
BceAI ACGGC 1 cut(s) 647
BciT130I CCWGG 3 cut(s) 382, 1344, 1366
BclI TGATCA 2 cut(s) 835, 1159
BcoDI GTCTC 2 cut(s) 958, 990
BfaI CTAG 5 cut(s) 65, 426, 612, 918, 993
BfmI CTRYAG 3 cut(s) 243, 1171, 1248
BfoI RGCGCY 1 cut(s) 1058
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 200
Bme1390I CCNGG 3 cut(s) 382, 1344, 1366
Bme18I GGWCC 2 cut(s) 817, 1348
BmgT120I GGNCC 2 cut(s) 817, 1348
BmiI GGNNCC 7 cut(s) 29, 40, 132, 204, 394, 414, 1349
BmrFI CCNGG 3 cut(s) 382, 1344, 1366
BmsI GCATC 4 cut(s) 14, 326, 359, 1262
BpiI GAAGAC 1 cut(s) 812
BplI GAGNNNNNCTC 2 cut(s) 1041, 1073
BpmI CTGGAG 3 cut(s) 411, 459, 1348
Bpu10I CCTNAGC 3 cut(s) 141, 746, 932
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 23, 102, 381, 1343
BsaWI WCCGGW 2 cut(s) 52, 875
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 562, 592
Bsc4I CCNNNNNNNGG 4 cut(s) 612, 855, 1038, 1146
Bse1I ACTGG 2 cut(s) 305, 335
Bse3DI GCAATG 3 cut(s) 216, 1135, 1291
BseAI TCCGGA 1 cut(s) 875
BseBI CCWGG 3 cut(s) 382, 1344, 1366
BseDI CCNNGG 4 cut(s) 23, 102, 381, 1343
BseGI GGATG 3 cut(s) 5, 368, 602
BseLI CCNNNNNNNGG 4 cut(s) 612, 855, 1038, 1146
BseMI GCAATG 3 cut(s) 216, 1135, 1291
BseMII CTCAG 4 cut(s) 132, 695, 755, 946
BseNI ACTGG 2 cut(s) 305, 335
BseRI GAGGAG 7 cut(s) 141, 177, 258, 261, 531, 711, 1065
BseX3I CGGCCG 1 cut(s) 660
BseXI GCAGC 9 cut(s) 257, 334, 876, 1022, 1179, 1191, 1194, 1234, 1262
BseYI CCCAGC 2 cut(s) 34, 497
Bsh1236I CGCG 1 cut(s) 903
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 5 cut(s) 124, 662, 751, 1394, 1416
BshNI GGYRCC 2 cut(s) 202, 412
BsiEI CGRYCG 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 1104
BsiSI CCGG 3 cut(s) 31, 53, 876
BslI CCNNNNNNNGG 4 cut(s) 612, 855, 1038, 1146
BsmAI GTCTC 2 cut(s) 958, 990
BsnI GGCC 5 cut(s) 124, 662, 751, 1394, 1416
Bsp1286I GDGCHC 3 cut(s) 41, 397, 1104
Bsp13I TCCGGA 1 cut(s) 875
Bsp143I GATC 4 cut(s) 835, 1000, 1159, 1339
Bsp19I CCATGG 1 cut(s) 102
Bsp68I TCGCGA 1 cut(s) 903
BspANI GGCC 5 cut(s) 124, 662, 751, 1394, 1416
BspCNI CTCAG 4 cut(s) 133, 694, 754, 945
BspEI TCCGGA 1 cut(s) 875
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 7 cut(s) 29, 40, 132, 204, 394, 414, 1349
BspMAI CTGCAG 2 cut(s) 247, 1252
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 1334
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 2 cut(s) 202, 412
BsrDI GCAATG 3 cut(s) 216, 1135, 1291
BsrI ACTGG 2 cut(s) 305, 335
BssECI CCNNGG 4 cut(s) 23, 102, 381, 1343
BssMI GATC 4 cut(s) 835, 1000, 1159, 1339
BssNAI GTATAC 1 cut(s) 1315
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 2 cut(s) 273, 1004
BssT1I CCWWGG 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 1315
Bst2BI CACGAG 2 cut(s) 273, 1004
Bst2UI CCWGG 3 cut(s) 382, 1344, 1366
Bst4CI ACNGT 6 cut(s) 228, 811, 1033, 1190, 1322, 1424
Bst6I CTCTTC 2 cut(s) 177, 735
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 243, 1015, 1208
BstDEI CTNAG 5 cut(s) 141, 681, 741, 746, 932
BstDSI CCRYGG 2 cut(s) 23, 102
BstF5I GGATG 3 cut(s) 5, 368, 602
BstFNI CGCG 1 cut(s) 903
BstH2I RGCGCY 1 cut(s) 1058
BstHHI GCGC 2 cut(s) 893, 1057
BstKTI GATC 4 cut(s) 838, 1003, 1162, 1342
BstMAI GTCTC 2 cut(s) 958, 990
BstMBI GATC 4 cut(s) 835, 1000, 1159, 1339
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 7 cut(s) 200, 527, 617, 1176, 1191, 1203, 1244
BstNI CCWGG 3 cut(s) 382, 1344, 1366
BstSCI CCNGG 3 cut(s) 380, 1342, 1364
BstSFI CTRYAG 3 cut(s) 243, 1171, 1248
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 9 cut(s) 257, 334, 876, 1022, 1179, 1191, 1194, 1234, 1262
BstV2I GAAGAC 1 cut(s) 812
BstXI CCANNNNNNTGG 2 cut(s) 1343, 1412
BstZ17I GTATAC 1 cut(s) 1315
BstZI CGGCCG 1 cut(s) 660
BsuRI GGCC 5 cut(s) 124, 662, 751, 1394, 1416
BtgI CCRYGG 2 cut(s) 23, 102
BtsCI GGATG 3 cut(s) 5, 368, 602
BtsI GCAGTG 3 cut(s) 165, 204, 606
BtsIMutI CAGTG 7 cut(s) 165, 204, 366, 468, 606, 816, 1195
BtuMI TCGCGA 1 cut(s) 903
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 243, 1015, 1208
CciI TCATGA 1 cut(s) 1275
CfoI GCGC 2 cut(s) 893, 1057
Cfr13I GGNCC 2 cut(s) 817, 1348
CseI GACGC 2 cut(s) 75, 221
Csp6I GTAC 2 cut(s) 413, 907
CviAII CATG 8 cut(s) 103, 855, 1018, 1060, 1088, 1276, 1337, 1406
CviQI GTAC 2 cut(s) 413, 907
DdeI CTNAG 5 cut(s) 141, 681, 741, 746, 932
DpnI GATC 4 cut(s) 837, 1002, 1161, 1341
DpnII GATC 4 cut(s) 835, 1000, 1159, 1339
EaeI YGGCCR 2 cut(s) 660, 1414
EagI CGGCCG 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 177, 735
EarI CTCTTC 2 cut(s) 177, 735
EciI GGCGGA 3 cut(s) 79, 498, 815
EclXI CGGCCG 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 41, 397
Eco47I GGWCC 2 cut(s) 817, 1348
Eco47III AGCGCT 1 cut(s) 1056
Eco52I CGGCCG 1 cut(s) 660
Eco57I CTGAAG 3 cut(s) 342, 444, 744
EcoRII CCWGG 3 cut(s) 380, 1342, 1364
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 41, 397
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 8 cut(s) 106, 858, 1021, 1063, 1091, 1279, 1340, 1409
FatI CATG 8 cut(s) 102, 854, 1017, 1059, 1087, 1275, 1336, 1405
FauI CCCGC 1 cut(s) 103
FbaI TGATCA 2 cut(s) 835, 1159
FblI GTMKAC 1 cut(s) 1314
FokI GGATG 2 cut(s) 355, 589
FriOI GRGCYC 2 cut(s) 41, 397
FspBI CTAG 5 cut(s) 65, 426, 612, 918, 993
GlaI GCGC 2 cut(s) 892, 1056
GsaI CCCAGC 2 cut(s) 38, 501
GsuI CTGGAG 3 cut(s) 411, 459, 1348
HaeII RGCGCY 1 cut(s) 1058
HaeIII GGCC 5 cut(s) 124, 662, 751, 1394, 1416
HapII CCGG 3 cut(s) 31, 53, 876
HgaI GACGC 2 cut(s) 75, 221
HhaI GCGC 2 cut(s) 893, 1057
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 8 cut(s) 106, 858, 1021, 1063, 1091, 1279, 1340, 1409
Hin6I GCGC 2 cut(s) 891, 1055
HinP1I GCGC 2 cut(s) 891, 1055
HindIII AAGCTT 1 cut(s) 1356
HinfI GANTC 3 cut(s) 966, 1150, 1296
HpaII CCGG 3 cut(s) 31, 53, 876
HphI GGTGA 8 cut(s) 222, 249, 294, 324, 678, 862, 1021, 1325
Hpy166II GTNNAC 4 cut(s) 310, 340, 1315, 1351
Hpy188I TCNGA 4 cut(s) 763, 1000, 1159, 1164
Hpy188III TCNNGA 6 cut(s) 140, 390, 876, 902, 1004, 1276
Hpy8I GTNNAC 4 cut(s) 310, 340, 1315, 1351
HpyAV CCTTC 7 cut(s) 24, 123, 426, 880, 1117, 1196, 1282
HpyCH4III ACNGT 6 cut(s) 228, 811, 1033, 1190, 1322, 1424
HpyCH4V TGCA 5 cut(s) 245, 350, 377, 1037, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 200, 527, 617, 1176, 1191, 1203, 1244
HpyF3I CTNAG 5 cut(s) 141, 681, 741, 746, 932
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 8 cut(s) 106, 858, 1021, 1063, 1091, 1279, 1340, 1409
HspAI GCGC 2 cut(s) 891, 1055
Kpn2I TCCGGA 1 cut(s) 875
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 2 cut(s) 835, 1159
Kzo9I GATC 4 cut(s) 835, 1000, 1159, 1339
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 8 cut(s) 44, 136, 142, 226, 392, 1052, 1099, 1379
Lsp1109I GCAGC 9 cut(s) 257, 334, 876, 1022, 1179, 1191, 1194, 1234, 1262
LweI GCATC 4 cut(s) 14, 326, 359, 1262
MaeI CTAG 5 cut(s) 65, 426, 612, 918, 993
MaeIII GTNAC 4 cut(s) 228, 277, 684, 1229
MalI GATC 4 cut(s) 837, 1002, 1161, 1341
MboI GATC 4 cut(s) 835, 1000, 1159, 1339
MboII GAAGA 8 cut(s) 164, 345, 348, 722, 817, 959, 962, 1211
MhlI GDGCHC 3 cut(s) 41, 397, 1104
MluCI AATT 4 cut(s) 469, 535, 625, 850
MlyI GAGTC 1 cut(s) 960
MmeI TCCRAC 1 cut(s) 844
MroI TCCGGA 1 cut(s) 875
MseI TTAA 1 cut(s) 666
MslI CAYNNNNRTG 2 cut(s) 1092, 1410
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 3 cut(s) 31, 53, 876
MspR9I CCNGG 3 cut(s) 382, 1344, 1366
MvaI CCWGG 3 cut(s) 382, 1344, 1366
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 7 cut(s) 200, 527, 617, 1176, 1191, 1203, 1244
NcoI CCATGG 1 cut(s) 102
NdeII GATC 4 cut(s) 835, 1000, 1159, 1339
NlaIII CATG 8 cut(s) 106, 858, 1021, 1063, 1091, 1279, 1340, 1409
NlaIV GGNNCC 7 cut(s) 29, 40, 132, 204, 394, 414, 1349
NmuCI GTSAC 4 cut(s) 228, 277, 684, 1229
NruI TCGCGA 1 cut(s) 903
PagI TCATGA 1 cut(s) 1275
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PfeI GAWTC 2 cut(s) 1150, 1296
PflMI CCANNNNNTGG 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 1364
PleI GAGTC 1 cut(s) 960
PpsI GAGTC 1 cut(s) 960
PsiI TTATAA 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 380, 1342, 1364
PspFI CCCAGC 2 cut(s) 34, 497
PspGI CCWGG 3 cut(s) 380, 1342, 1364
PspN4I GGNNCC 7 cut(s) 29, 40, 132, 204, 394, 414, 1349
PspPI GGNCC 2 cut(s) 817, 1348
PstI CTGCAG 2 cut(s) 247, 1252
PvuII CAGCTG 1 cut(s) 1013
RruI TCGCGA 1 cut(s) 903
RsaI GTAC 2 cut(s) 414, 908
RsaNI GTAC 2 cut(s) 413, 907
RseI CAYNNNNRTG 2 cut(s) 1092, 1410
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 666
Sau3AI GATC 4 cut(s) 835, 1000, 1159, 1339
Sau96I GGNCC 2 cut(s) 817, 1348
SchI GAGTC 1 cut(s) 960
ScrFI CCNGG 3 cut(s) 382, 1344, 1366
SduI GDGCHC 3 cut(s) 41, 397, 1104
SfaNI GCATC 4 cut(s) 14, 326, 359, 1262
SfcI CTRYAG 3 cut(s) 243, 1171, 1248
SinI GGWCC 2 cut(s) 817, 1348
SmiMI CAYNNNNRTG 2 cut(s) 1092, 1410
Sse9I AATT 4 cut(s) 469, 535, 625, 850
SspMI CTAG 5 cut(s) 65, 426, 612, 918, 993
StyD4I CCNGG 3 cut(s) 380, 1342, 1364
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 6 cut(s) 228, 811, 1033, 1190, 1322, 1424
TaqI TCGA 1 cut(s) 884
TasI AATT 4 cut(s) 469, 535, 625, 850
TauI GCSGC 3 cut(s) 197, 1197, 1419
TfiI GAWTC 2 cut(s) 1150, 1296
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 7 cut(s) 172, 204, 366, 468, 613, 816, 1195
TseFI GTSAC 4 cut(s) 228, 277, 684, 1229
TseI GCWGC 9 cut(s) 245, 347, 864, 1010, 1167, 1179, 1182, 1247, 1250
Tsp45I GTSAC 4 cut(s) 228, 277, 684, 1229
TspDTI ATGAA 5 cut(s) 276, 591, 843, 1264, 1292
TspGWI ACGGA 6 cut(s) 12, 38, 285, 315, 978, 1392
TspRI CASTG 7 cut(s) 172, 204, 366, 468, 613, 816, 1195
Van91I CCANNNNNTGG 1 cut(s) 855
VpaK11BI GGWCC 2 cut(s) 817, 1348
XapI RAATTY 2 cut(s) 469, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 1409
XmiI GTMKAC 1 cut(s) 1314
XspI CTAG 5 cut(s) 65, 426, 612, 918, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.