Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Forward (+)

19204185 .. 19205136

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46735.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGGACCGTGAAACCGGCGGCGATGCCGGTTCAATTTCATATGAGACCCACCGTAGCAACTTCCGTCGCCTATTCACAGCCACCACCACATAATTACGACGGAATCCACCGTCGATTCATTAACGTTCCGACGAAATCACAAACTTCCGAATCCGTCGGCGGATTAGGCCAACAAATCCTCCTCCGCACCGTCGATTCGAACCCAAGAAAACCAATCCCGAAGGAGACAGAGATTAGCGGATCAGACGTGCTCTGGGCGATTCAGAGAGCGACGGCTCAGAGGAAGAGAACAAACGCCGGTAAAAAGAAGACGAAGAATCGGCTCAGCGGTGTGGAGCTATCATCCTCTGCGGGCGAGCCCACTGGAGATAACGGTGTTGATTACAGTAACGTGACGCCGTTAAGGATCAAGAGTGATTGGGGTCACAGATTAGAGGAATTCGAGAAGCTTCTCAAAGAGTTTCAAAACACGGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

9.82

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	20, 162, 187, 240, 330, 353
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	2 cut(s)	250, 416
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	35, 467
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	2 cut(s)	340, 451
AluI	AGCT	2 cut(s)	340, 451
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	40, 221
AlwI	GGATC	2 cut(s)	250, 416
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	6
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	255
BceAI	ACGGC	2 cut(s)	291, 385
BcoDI	GTCTC	2 cut(s)	40, 221
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse118I	RCCGGY	3 cut(s)	16, 28, 299
Bse1I	ACTGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	293, 340
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	17, 29, 300
BsmAI	GTCTC	2 cut(s)	40, 221
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	255, 363
Bsp143I	GATC	2 cut(s)	242, 408
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	6 cut(s)	20, 162, 187, 240, 330, 353
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	292, 339
BspPI	GGATC	2 cut(s)	250, 416
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	40
BsrFI	RCCGGY	3 cut(s)	16, 28, 299
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	3 cut(s)	16, 28, 299
BssMI	GATC	2 cut(s)	242, 408
BssNI	GRCGYC	1 cut(s)	398
Bst4CI	ACNGT	6 cut(s)	10, 55, 113, 193, 377, 389
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	355, 359
BstDEI	CTNAG	2 cut(s)	279, 326
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	245, 411
BstMAI	GTCTC	2 cut(s)	40, 221
BstMBI	GATC	2 cut(s)	242, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	355, 359
Cfr10I	RCCGGY	3 cut(s)	16, 28, 299
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	406
CviJI	RGCY	7 cut(s)	82, 171, 278, 325, 340, 361, 451
CviKI_1	RGCY	7 cut(s)	82, 171, 278, 325, 340, 361, 451
DdeI	CTNAG	2 cut(s)	279, 326
DpnI	GATC	2 cut(s)	244, 410
DpnII	GATC	2 cut(s)	242, 408
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	363
FaiI	YATR	3 cut(s)	42, 44, 93
FauI	CCCGC	1 cut(s)	346
FauNDI	CATATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	17, 29, 300
HgaI	GACGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	6 cut(s)	105, 117, 152, 197, 262, 319
HpaII	CCGG	3 cut(s)	17, 29, 300
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	132, 151, 247, 267, 282
Hpy188III	TCNNGA	3 cut(s)	220, 412, 445
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	7 cut(s)	71, 104, 117, 136, 161, 197, 277
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	6 cut(s)	10, 55, 113, 193, 377, 389
HpyCH4IV	ACGT	3 cut(s)	126, 249, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	279, 326
HpySE526I	ACGT	3 cut(s)	126, 249, 393
Hsp92I	GRCGYC	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	242, 408
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	5 cut(s)	30, 42, 241, 313, 351
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	3 cut(s)	126, 249, 393
MaeIII	GTNAC	3 cut(s)	389, 394, 425
MalI	GATC	2 cut(s)	244, 410
MboI	GATC	2 cut(s)	242, 408
MboII	GAAGA	3 cut(s)	298, 322, 328
MhlI	GDGCHC	2 cut(s)	255, 363
MluCI	AATT	3 cut(s)	35, 94, 440
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	191, 194, 276, 358, 430
MseI	TTAA	2 cut(s)	123, 404
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	3 cut(s)	17, 29, 300
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	2 cut(s)	242, 408
NmuCI	GTSAC	2 cut(s)	394, 425
NspV	TTCGAA	1 cut(s)	200
PfeI	GAWTC	6 cut(s)	105, 117, 152, 197, 262, 319
PkrI	GCNGC	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	123, 404
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	242, 408
Sau96I	GGNCC	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	255, 363
SetI	ASST	5 cut(s)	129, 252, 342, 396, 453
SfaNI	GCATC	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	6
Sse9I	AATT	3 cut(s)	35, 94, 440
SsiI	CCGC	6 cut(s)	20, 162, 187, 240, 330, 353
TaaI	ACNGT	6 cut(s)	10, 55, 113, 193, 377, 389
TaiI	ACGT	3 cut(s)	129, 252, 396
TaqI	TCGA	4 cut(s)	115, 195, 200, 444
TasI	AATT	3 cut(s)	35, 94, 440
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	6 cut(s)	105, 117, 152, 197, 262, 319
Tru1I	TTAA	2 cut(s)	123, 404
Tru9I	TTAA	2 cut(s)	123, 404
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	394, 425
Tsp45I	GTSAC	2 cut(s)	394, 425
TspDTI	ATGAA	2 cut(s)	29, 109
TspGWI	ACGGA	3 cut(s)	55, 117, 145
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.