Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Reverse (-)

33861330 .. 33861893

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1232300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATATCTACAACGCATTTGGTACATTCAGGTATCGTTTGGTACGTAGGATGGGATAAAATAAAATGGGACAAGATGTTCCGTTTCATGTTTGATGCACCTAAAACGGGTGGAACGCGTTGTTCCACGGGACGAATTTTGGGTGAATTTTTATTCCGCCTCACTCCCTGGAACGACTCGTTCCACATCTGTGGAACACAAAATTATAATCTCTCTATCTCCTTCTTCCTCCTTGTTTCCATCTTAGGGCATCTTTACTCCCTCTCCGTTCTGTCCCGTCCCATTCTGTTCCGTCCCGTCCCGTCTGCATACCAACGATATCTCAAGGAACTTGACATCTTTACAGAAGCAATTAGAAGGTTTGATTTAAACAAAGTATTGCTTTATATAAAGATTACGTTTTTCCTGAAGCCAACAATTTATATGCTTAGGATGATTCCCCAGAACGACAATTCTCTGCCAATTGTCCCGACGAGATCCGGAGGAATGGTGCGACCTCCTCTCGTGATCCAACCTTCAATTGATCATCTCGCTCTTCTTTTTTTCTGCCAACAAATTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.74

Weight (kDa)

9.75

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	479
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	471, 502
AcsI	RAATTY	3 cut(s)	135, 146, 555
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	24, 44
AfiI	CCNNNNNNNGG	2 cut(s)	107, 246
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	519
AjnI	CCWGG	1 cut(s)	167
AleI	CACNNNNGTG	1 cut(s)	189
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AlwI	GGATC	2 cut(s)	471, 502
Aor13HI	TCCGGA	1 cut(s)	479
ApoI	RAATTY	3 cut(s)	135, 146, 555
AsuHPI	GGTGA	1 cut(s)	155
BauI	CACGAG	1 cut(s)	503
BccI	CCATC	2 cut(s)	45, 248
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	85, 259
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	126, 167
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 246
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	126, 167
BseGI	GGATG	2 cut(s)	56, 438
BseLI	CCNNNNNNNGG	2 cut(s)	107, 246
BseRI	GAGGAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	7 cut(s)	83, 144, 259, 264, 279, 284, 452
BslI	CCNNNNNNNGG	2 cut(s)	107, 246
BsmFI	GGGAC	7 cut(s)	83, 144, 259, 264, 279, 284, 452
Bsp13I	TCCGGA	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	476, 507, 523
BspACI	CCGC	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	471, 502
BspQI	GCTCTTC	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	126, 167
BssMI	GATC	3 cut(s)	476, 507, 523
BssSI	CACGAG	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	244, 428
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	56, 438
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	479, 510, 526
BstMBI	GATC	3 cut(s)	476, 507, 523
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSNI	TACGTA	1 cut(s)	46
BstUI	CGCG	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	56, 438
Csp6I	GTAC	2 cut(s)	23, 43
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	1 cut(s)	412
CviKI_1	RGCY	1 cut(s)	412
CviQI	GTAC	2 cut(s)	23, 43
DdeI	CTNAG	2 cut(s)	244, 428
DpnI	GATC	3 cut(s)	478, 509, 525
DpnII	GATC	3 cut(s)	476, 507, 523
DraI	TTTAAA	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	146
Eco105I	TACGTA	1 cut(s)	46
Eco32I	GATATC	2 cut(s)	6, 320
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	2 cut(s)	6, 320
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	89, 207, 310, 387, 389, 423, 425
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	7 cut(s)	83, 144, 259, 264, 279, 284, 452
FatI	CATG	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	2 cut(s)	63, 445
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	2 cut(s)	176, 436
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	155
Hpy188III	TCNNGA	4 cut(s)	406, 469, 480, 505
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	3 cut(s)	232, 351, 525
HpyCH4IV	ACGT	2 cut(s)	45, 398
HpyCH4V	TGCA	2 cut(s)	98, 308
HpyF3I	CTNAG	2 cut(s)	244, 428
HpySE526I	ACGT	2 cut(s)	45, 398
Hsp92II	CATG	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	476, 507, 523
LguI	GCTCTTC	1 cut(s)	540
LpnPI	CCDG	6 cut(s)	15, 154, 181, 419, 455, 493
LweI	GCATC	2 cut(s)	85, 259
MaeII	ACGT	2 cut(s)	45, 398
MalI	GATC	3 cut(s)	478, 509, 525
MboI	GATC	3 cut(s)	476, 507, 523
MboII	GAAGA	2 cut(s)	217, 527
MfeI	CAATTG	2 cut(s)	462, 519
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	9 cut(s)	135, 146, 202, 351, 417, 451, 462, 519, 555
MluI	ACGCGT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	6 cut(s)	170, 239, 272, 476, 507, 510
MroI	TCCGGA	1 cut(s)	479
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	2 cut(s)	462, 519
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	118
NdeII	GATC	3 cut(s)	476, 507, 523
NlaIII	CATG	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	24, 44
RsaNI	GTAC	2 cut(s)	23, 43
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	3 cut(s)	476, 507, 523
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	7 cut(s)	34, 48, 103, 362, 401, 499, 517
SfaNI	GCATC	2 cut(s)	85, 259
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	46
Sse9I	AATT	9 cut(s)	135, 146, 202, 351, 417, 451, 462, 519, 555
SsiI	CCGC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	167
TaiI	ACGT	2 cut(s)	48, 401
TasI	AATT	9 cut(s)	135, 146, 202, 351, 417, 451, 462, 519, 555
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	3 cut(s)	71, 256, 281
XapI	RAATTY	3 cut(s)	135, 146, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.