pycom01g11150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007833
Physical Location & Seq
Forward (+)
12042539 .. 12043000
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11150.1

Sequence Viewer

Length: 462 bp
ATGTGGGCAGTGACCTACCCGCCCCCGCCACCACCATCTCAACCTCTCATCCCCAAACCACCTCCGACGTACCCCGTCCGCCTCTCTATTGCCGCAAAGTCTCAGCCGCCATCCCAAGACCTCGGAGGCTTAGGCCGATCAATCCTCACAAAACTCAAATCCAATCCCAACCCAAAATTACAAGGAAAGCAAAAGCAAGATGAAGAGGGTAAGAAGGTAATTAGCGGGTCGGATGTGCTTTTCGCCATGCAGAGAGCAGCGGCGAAGAAAAACAGAGAGAGCGTTAAGAAAAAGAAGAAGGCACCGCCGTCGTCGTCGTCATCCCATGCGGGCAGTCACAGGGAAGAGGAAGGTGTGGACGAGTATGGTAACGTGAGGTCCTTGCGTGTGAAAAGCGAGTGGGGTAGTAGGTTGGATGAGTTGGGAAAACGCCTTCAAGAGCTTTCTTCCAAGGCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.71

Weight (kDa)

10.07

Isoelectric Point (pI)

63.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AciI CCGC 9 cut(s) 20, 26, 79, 93, 107, 225, 260, 305, 329
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 437
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 2 cut(s) 133, 453
ApeKI GCWGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 378, 454
AvaII GGWCC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 43, 118
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BcoDI GTCTC 1 cut(s) 105
BisI GCNGC 4 cut(s) 93, 107, 258, 261
BlsI GCNGC 4 cut(s) 94, 108, 259, 262
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 378, 454
BmiI GGNNCC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 121, 450
BseDI CCNNGG 2 cut(s) 121, 450
BseGI GGATG 5 cut(s) 48, 110, 238, 320, 421
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 2 cut(s) 135, 455
BshNI GGYRCC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 135, 455
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 9 cut(s) 20, 26, 79, 93, 107, 225, 260, 305, 329
BspANI GGCC 2 cut(s) 135, 455
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 121, 450
BssMI GATC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 450
Bst6I CTCTTC 2 cut(s) 198, 339
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 102, 130
BstF5I GGATG 5 cut(s) 48, 110, 238, 320, 421
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 135, 455
BtsCI GGATG 5 cut(s) 48, 110, 238, 320, 421
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 378, 454
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 247, 326
CviJI RGCY 5 cut(s) 106, 129, 135, 442, 455
CviKI_1 RGCY 5 cut(s) 106, 129, 135, 442, 455
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 102, 130
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 198, 339
EarI CTCTTC 2 cut(s) 198, 339
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 378
EcoO109I RGGNCCY 2 cut(s) 378, 454
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 2 cut(s) 250, 329
FaiI YATR 3 cut(s) 248, 327, 366
FatI CATG 2 cut(s) 246, 325
FauI CCCGC 4 cut(s) 27, 33, 218, 322
Fnu4HI GCNGC 4 cut(s) 93, 107, 258, 261
FokI GGATG 5 cut(s) 35, 97, 245, 307, 428
Fsp4HI GCNGC 4 cut(s) 93, 107, 258, 261
GluI GCNGC 4 cut(s) 93, 107, 258, 261
HaeIII GGCC 2 cut(s) 135, 455
Hin1II CATG 2 cut(s) 250, 329
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 66, 125, 232
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 4 cut(s) 70, 313, 316, 319
HpyAV CCTTC 4 cut(s) 208, 292, 344, 443
HpyCH4IV ACGT 2 cut(s) 68, 372
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 102, 130
HpySE526I ACGT 2 cut(s) 68, 372
Hsp92II CATG 2 cut(s) 250, 329
Kzo9I GATC 1 cut(s) 137
LpnPI CCDG 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 269
MaeII ACGT 2 cut(s) 68, 372
MaeIII GTNAC 3 cut(s) 10, 335, 368
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 5 cut(s) 215, 277, 307, 356, 438
MluCI AATT 2 cut(s) 176, 219
MmeI TCCRAC 3 cut(s) 89, 210, 393
MnlI CCTC 9 cut(s) 54, 72, 92, 119, 131, 155, 199, 340, 369
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 260
NdeII GATC 1 cut(s) 137
NlaIII CATG 2 cut(s) 250, 329
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 10, 335
PkrI GCNGC 4 cut(s) 94, 108, 259, 262
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 378, 454
PspPPI RGGWCCY 1 cut(s) 378
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 4 cut(s) 93, 107, 258, 261
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 2 cut(s) 378, 454
SinI GGWCC 1 cut(s) 378
Sse9I AATT 2 cut(s) 176, 219
SsiI CCGC 9 cut(s) 20, 26, 79, 93, 107, 225, 260, 305, 329
StyI CCWWGG 1 cut(s) 450
TaiI ACGT 2 cut(s) 71, 375
TasI AATT 2 cut(s) 176, 219
TauI GCSGC 3 cut(s) 95, 109, 263
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 10, 335
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 2 cut(s) 10, 335
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.