Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Forward (+)

35368898 .. 35369311

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1276400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATATAGGAAACTTGTATTTCTCATTGACAAATCCTTCTTTGTTTATGTTGCTAATTCTCAATTTGGTCCCACTTCTGGTTCATTTTGGGTGCGTTTGGTACGTGGGACGGGACGGGACGGAACGAGACGAGGCGTTCCGTCCCGCGTTTGGTGCGCCAAAAATGGATGGAACGGGCTGTTCCACGGGACAGATTTTGGGTGTTTTTGCGTTCCACCTCCCCCCCTGGAACGGGTTTGTTCCACGTCTATGGAACACAATGTTTTACCATTTTAAGACAAATATACCCCATGTCTTTTTCAAAAATTACACCTTCGTTCCGTCCTGTCCCGTCCCGTCCCGTCCCGTCTGCGTACCAAACACACCCTTTGTTACTAAAAACAGAGAAGGAAACTCAGTACCATATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

9.05

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	104, 357, 402
AfiI	CCNNNNNNNGG	4 cut(s)	79, 152, 233, 234
AgsI	TTSAA	1 cut(s)	304
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	186, 227
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 152, 233, 234
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	186, 227
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	4 cut(s)	79, 152, 233, 234
BseMII	CTCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	149
BslI	CCNNNNNNNGG	4 cut(s)	79, 152, 233, 234
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	186, 227
Bst2UI	CCWGG	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	103, 356, 401
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	1 cut(s)	180
CviKI_1	RGCY	1 cut(s)	180
CviQI	GTAC	3 cut(s)	103, 356, 401
DdeI	CTNAG	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	296
FaiI	YATR	8 cut(s)	6, 8, 50, 253, 287, 294, 406, 408
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	406
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	412
GlaI	GCGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	48, 325, 383
HpyCH4IV	ACGT	2 cut(s)	105, 247
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	105, 247
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	158
LpnPI	CCDG	4 cut(s)	65, 214, 241, 340
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	2 cut(s)	105, 247
MaeIII	GTNAC	1 cut(s)	373
MluCI	AATT	3 cut(s)	57, 64, 307
MnlI	CCTC	2 cut(s)	127, 230
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	406
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	6
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	70
RsaI	GTAC	3 cut(s)	104, 357, 402
RsaNI	GTAC	3 cut(s)	103, 356, 401
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	4 cut(s)	108, 222, 250, 317
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	57, 64, 307
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	2 cut(s)	108, 250
TasI	AATT	3 cut(s)	57, 64, 307
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	3 cut(s)	131, 137, 312
VpaK11BI	GGWCC	1 cut(s)	70
XspI	CTAG	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.