Rh1CG277000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
54588045 .. 54589197
1153 bp
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UTR
Exon/CDS
Intron
Rh1CG277000.1

Sequence Viewer

Length: 510 bp
ATGTATGTGGCCGGAGCAACCCGAAAACCCAAACCACACACCACCACCATGTGGTCATCCCACTACCTGTCCCCGCCAACACCACTCCACCTTCTCATCCCTCTTCCCCTCACCGTCGTCTCCGCCAAGTCTCAGCCACAACCAGGCCAAGACTTGGGAGGCTTAGGCCGTTCATTTCTCACAAAACTCAAACCCAACCCCAAACCCACCAATATTACCGCCGTCACAAAACAGCAGAAGCAGAAACAAGAGGACAGCAGTCGCCAGATAAGCGGGTCAGAAGTGCTTTTCGCTATGCAGAAAGCAGCTGCCAAGAAACGAAAAGAGACTCGGAAGAAGAAAACGAAGACGAGTGCGGAGGGGTTATTGTCTGTGGGCAGGCACAGGGAAGAGGAGGAGGATGAAGTGGACTACAGCAAAGTGAGGCCCTTGTGTTTGAAGAGTGATTGGGGAAGAAGATTGGATGAGTTGGAAATGCGTCTTCAGGAGCTTTCTTCCAAGACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.0

Weight (kDa)

9.96

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 51, 154
AciI CCGC 5 cut(s) 74, 123, 219, 273, 356
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 467
AdeI CACNNNGTG 1 cut(s) 51
AfiI CCNNNNNNNGG 3 cut(s) 51, 143, 154
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 308, 490
AluI AGCT 2 cut(s) 308, 490
Alw26I GTCTC 3 cut(s) 124, 135, 320
AoxI GGCC 4 cut(s) 9, 145, 166, 425
ApeKI GCWGC 2 cut(s) 305, 308
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 353, 473
BbvI GCAGC 2 cut(s) 295, 317
BceAI ACGGC 2 cut(s) 153, 206
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 124, 135, 320
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 2 cut(s) 306, 309
BlsI GCNGC 2 cut(s) 307, 310
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 2 cut(s) 353, 473
Bpu10I CCTNAGC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 143, 154
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 4 cut(s) 56, 96, 406, 469
BseLI CCNNNNNNNGG 3 cut(s) 51, 143, 154
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 407, 410
BseXI GCAGC 2 cut(s) 295, 317
BshFI GGCC 4 cut(s) 11, 147, 168, 427
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 51, 143, 154
BsmAI GTCTC 3 cut(s) 124, 135, 320
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 4 cut(s) 11, 147, 168, 427
BspACI CCGC 5 cut(s) 74, 123, 219, 273, 356
BspANI GGCC 4 cut(s) 11, 147, 168, 427
BspCNI CTCAG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 108, 384, 434
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 132, 163
BstF5I GGATG 4 cut(s) 56, 96, 406, 469
BstMAI GTCTC 3 cut(s) 124, 135, 320
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 144
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 295, 317
BstV2I GAAGAC 2 cut(s) 353, 473
BsuRI GGCC 4 cut(s) 11, 147, 168, 427
BtsCI GGATG 4 cut(s) 56, 96, 406, 469
Cac8I GCNNGC 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 426
CseI GACGC 1 cut(s) 467
CviAII CATG 1 cut(s) 49
CviJI RGCY 8 cut(s) 11, 136, 147, 162, 168, 308, 427, 490
CviKI_1 RGCY 8 cut(s) 11, 136, 147, 162, 168, 308, 427, 490
DdeI CTNAG 2 cut(s) 132, 163
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 108, 384, 434
EarI CTCTTC 3 cut(s) 108, 384, 434
EciI GGCGGA 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 6, 50, 296
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 48
FauI CCCGC 2 cut(s) 81, 266
Fnu4HI GCNGC 2 cut(s) 306, 309
FokI GGATG 4 cut(s) 43, 83, 413, 476
Fsp4HI GCNGC 2 cut(s) 306, 309
GluI GCNGC 2 cut(s) 306, 309
HaeIII GGCC 4 cut(s) 11, 147, 168, 427
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 467
Hin1II CATG 1 cut(s) 52
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 280, 333
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 2 cut(s) 132, 163
Hsp92II CATG 1 cut(s) 52
LmnI GCTCC 2 cut(s) 14, 487
LpnPI CCDG 8 cut(s) 25, 80, 129, 156, 278, 364, 370, 470
Lsp1109I GCAGC 2 cut(s) 295, 317
MaeIII GTNAC 1 cut(s) 223
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 111, 119, 152, 244, 352, 385, 388, 391, 417
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 270
NlaIII CATG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 223
PflMI CCANNNNNTGG 2 cut(s) 51, 154
PkrI GCNGC 2 cut(s) 307, 310
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshAI GACNNNNGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 306, 309
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 69, 93, 310, 492
SfcI CTRYAG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 5 cut(s) 74, 123, 219, 273, 356
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 115
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 305, 308
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 162, 417
Van91I CCANNNNNTGG 2 cut(s) 51, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.