Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Reverse (-)

107383 .. 109306

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTATTGGACTCAAATCGCTGCCTGCGAGTTGCGAGAACTGGGATCCAGTGTAGGTTTGGCCGAAAGACCAATTGGGAGGAGCTACATTGTTGGAGATGAGTGTGCGGCCATCACTGGTTGTGACCTTGAAAGAAAGGGATTGACTGTTAAGGTAGGAGTTGCTTTGCTAATTCTGACCCCAGTTCCGGGACATAGCCTGCCAACTGGTTTTCGAACCCTTAATAGACACACCCACCACATCACCAGCTCCACCAACATTGGTTATAAGCACCAGATTGAAGTAGGGGTGCCCATTTATTGTGAATCTGATTCCACCCTTCTTCTTGCAAGCAACCCTGCATTATGGAACATATATATGTATGTATGTATGTATGTATTGTTCATATGGGTACCGTTTGGTACGTGGGACGGGACGGAACAGAGTAGGACAAGGCGTTCCGTCCCACGTTTGGTGCGCCTAAAACGGGTGGAACGAGCTGTTCCACGGGACGAGTTTTGGGTGAATTTTCGTTCCACCTCACCCCCTGGAACGACTCGTTCCACATCCGTGGAACACAAAATTATAACCTCTCCGTCTCCTTCTTCTTCCTCCTTGTTTCCATCCAAGGGCATCTTTGCTCCCGCTCCGTTCCGTTCCGTCCTGTCCCGTCCCATCCCGTCTCATTTCGTTCCGTCCCGTCCCGTCTGCATACCAAACGATACCTATAGATCTGGATATAGAGATGGCCGATGGGAGAAGATTAAGGACTTACGTAAATGGCCAAGTTGTAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.13

Weight (kDa)

9.68

Isoelectric Point (pI)

69.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 566
Acc65I	GGTACC	1 cut(s)	391
AccB1I	GGYRCC	2 cut(s)	289, 391
AccBSI	CCGCTC	1 cut(s)	626
AciI	CCGC	2 cut(s)	107, 624
AclWI	GGATC	2 cut(s)	39, 52
AcoI	YGGCCR	4 cut(s)	60, 108, 727, 761
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	2 cut(s)	393, 403
AfiI	CCNNNNNNNGG	5 cut(s)	187, 188, 451, 466, 608
AgsI	TTSAA	2 cut(s)	131, 281
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AleI	CACNNNNGTG	1 cut(s)	548
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	3 cut(s)	84, 249, 479
AluI	AGCT	3 cut(s)	84, 249, 479
Alw26I	GTCTC	2 cut(s)	582, 666
AlwI	GGATC	2 cut(s)	39, 52
AoxI	GGCC	4 cut(s)	60, 108, 727, 761
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	235, 513, 514
AsuII	TTCGAA	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	289, 391
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	5 cut(s)	119, 610, 662, 719, 726
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	582, 666
BfmI	CTRYAG	1 cut(s)	706
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	2 cut(s)	21, 108
BlsI	GCNGC	2 cut(s)	22, 109
Bme1390I	CCNGG	2 cut(s)	189, 528
BmiI	GGNNCC	3 cut(s)	46, 291, 393
BmrFI	CCNGG	2 cut(s)	189, 528
BmrI	ACTGGG	2 cut(s)	50, 176
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	2 cut(s)	50, 176
Bpu14I	TTCGAA	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	189
BsaAI	YACGTR	2 cut(s)	405, 755
BsaJI	CCNNGG	4 cut(s)	485, 526, 549, 606
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 188, 451, 466, 608
Bse1I	ACTGG	5 cut(s)	45, 48, 121, 182, 211
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	485, 526, 549, 606
BseGI	GGATG	3 cut(s)	545, 602, 654
BseLI	CCNNNNNNNGG	5 cut(s)	187, 188, 451, 466, 608
BseNI	ACTGG	5 cut(s)	45, 48, 121, 182, 211
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	4 cut(s)	62, 110, 729, 763
BshNI	GGYRCC	2 cut(s)	289, 391
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	9 cut(s)	204, 422, 427, 428, 503, 631, 636, 661, 666
BslI	CCNNNNNNNGG	5 cut(s)	187, 188, 451, 466, 608
BsmAI	GTCTC	2 cut(s)	582, 666
BsmBI	CGTCTC	2 cut(s)	582, 666
BsmFI	GGGAC	9 cut(s)	204, 422, 427, 428, 503, 631, 636, 661, 666
BsnI	GGCC	4 cut(s)	62, 110, 729, 763
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	44, 710
BspACI	CCGC	2 cut(s)	107, 624
BspANI	GGCC	4 cut(s)	62, 110, 729, 763
BspLI	GGNNCC	3 cut(s)	46, 291, 393
BspPI	GGATC	2 cut(s)	39, 52
BspT104I	TTCGAA	1 cut(s)	214
BspT107I	GGYRCC	2 cut(s)	289, 391
BsrBI	CCGCTC	1 cut(s)	626
BsrI	ACTGG	5 cut(s)	45, 48, 121, 182, 211
BssECI	CCNNGG	4 cut(s)	485, 526, 549, 606
BssMI	GATC	2 cut(s)	44, 710
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	148, 396
BstBAI	YACGTR	2 cut(s)	405, 755
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	25, 200, 331
BstDSI	CCRYGG	2 cut(s)	485, 549
BstF5I	GGATG	3 cut(s)	545, 602, 654
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	47, 713
BstMAI	GTCTC	2 cut(s)	582, 666
BstMBI	GATC	2 cut(s)	44, 710
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	187, 526
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	755
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	2 cut(s)	44, 710
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	44, 710
BsuRI	GGCC	4 cut(s)	62, 110, 729, 763
BtgI	CCRYGG	2 cut(s)	485, 549
BtsCI	GGATG	3 cut(s)	545, 602, 654
BtsIMutI	CAGTG	2 cut(s)	55, 114
Cac8I	GCNNGC	3 cut(s)	25, 200, 331
CfoI	GCGC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	392, 402
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviJI	RGCY	8 cut(s)	62, 84, 110, 198, 249, 479, 729, 763
CviKI_1	RGCY	8 cut(s)	62, 84, 110, 198, 249, 479, 729, 763
CviQI	GTAC	2 cut(s)	392, 402
DpnI	GATC	2 cut(s)	46, 712
DpnII	GATC	2 cut(s)	44, 710
EaeI	YGGCCR	4 cut(s)	60, 108, 727, 761
Eco105I	TACGTA	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	2 cut(s)	582, 666
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	9 cut(s)	204, 422, 427, 428, 503, 631, 636, 661, 666
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	21, 108
FokI	GGATG	3 cut(s)	532, 589, 641
Fsp4HI	GCNGC	2 cut(s)	21, 108
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	2 cut(s)	21, 108
HaeIII	GGCC	4 cut(s)	62, 110, 729, 763
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	459
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	10, 305, 311, 535
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	235, 513, 514
Hpy188I	TCNGA	2 cut(s)	177, 310
Hpy188III	TCNNGA	1 cut(s)	714
HpyAV	CCTTC	2 cut(s)	329, 591
HpyCH4III	ACNGT	2 cut(s)	148, 396
HpyCH4IV	ACGT	3 cut(s)	404, 448, 754
HpyCH4V	TGCA	3 cut(s)	329, 341, 690
HpySE526I	ACGT	3 cut(s)	404, 448, 754
HspAI	GCGC	1 cut(s)	457
KpnI	GGTACC	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	44, 710
LmnI	GCTCC	4 cut(s)	81, 254, 625, 631
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	621
MaeII	ACGT	3 cut(s)	404, 448, 754
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	46, 712
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	2 cut(s)	44, 710
MboII	GAAGA	4 cut(s)	314, 576, 579, 751
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	2 cut(s)	44, 710
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	4 cut(s)	72, 171, 505, 561
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	2 cut(s)	4, 529
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	72, 529, 580, 601
Mox20I	TGGCCA	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	3 cut(s)	150, 222, 744
MslI	CAYNNNNRTG	2 cut(s)	356, 548
Msp20I	TGGCCA	1 cut(s)	763
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	189, 528
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	528
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	2 cut(s)	44, 710
NlaIV	GGNNCC	3 cut(s)	46, 291, 393
NmuCI	GTSAC	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 472
PfeI	GAWTC	2 cut(s)	305, 311
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	22, 109
PleI	GAGTC	2 cut(s)	4, 529
PpsI	GAGTC	2 cut(s)	4, 529
Ppu21I	YACGTR	2 cut(s)	405, 755
PsiI	TTATAA	2 cut(s)	267, 566
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	46, 291, 393
PsrI	GAACNNNNNNTAC	2 cut(s)	365, 397
PsuI	RGATCY	2 cut(s)	44, 710
RsaI	GTAC	2 cut(s)	393, 403
RsaNI	GTAC	2 cut(s)	392, 402
RseI	CAYNNNNRTG	2 cut(s)	356, 548
SaqAI	TTAA	3 cut(s)	150, 222, 744
SatI	GCNGC	2 cut(s)	21, 108
Sau3AI	GATC	2 cut(s)	44, 710
SchI	GAGTC	2 cut(s)	4, 529
ScrFI	CCNGG	2 cut(s)	189, 528
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	706
SfuI	TTCGAA	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	356, 548
SnaBI	TACGTA	1 cut(s)	755
Sse9I	AATT	4 cut(s)	72, 171, 505, 561
SsiI	CCGC	2 cut(s)	107, 624
StyD4I	CCNGG	2 cut(s)	187, 526
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	148, 396
TaiI	ACGT	3 cut(s)	407, 451, 757
TaqI	TCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	72, 171, 505, 561
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	305, 311
Tru1I	TTAA	3 cut(s)	150, 222, 744
Tru9I	TTAA	3 cut(s)	150, 222, 744
TscAI	CASTG	2 cut(s)	55, 121
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	8 cut(s)	430, 431, 538, 564, 618, 623, 628, 663
TspRI	CASTG	2 cut(s)	55, 121
XapI	RAATTY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.