Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007833

Physical Location & Seq

Genomic Coordinates Forward (+)

30874409 .. 30874827

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1241400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGTGGAACGCACTGTTCCACGGGACGAATTTTGGATGAATTTTCATTCCACCTCATCCCCTGGAACGACTCGTTCCACATCCGTGGAACACAAAATTATAACCTCTCCATCTCCTTCTTCTTCCTCCTTGTTTCCATCCAAGGGCATCTTTGCTCCCTCTCTGTTCCATCCTGTCCTGTCCCGTCCCATCCCGTCCCATTCCGTTCTGTCCGTCTTGTCTGCATACCGAACGATACAAAAGACCCAGATCAGAGATTTGCAGCATTCATGGCCCCATTGACATGGGGTCGTGTAACTATAGCAGTCAGTGCCGTTTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

109

Amino Acids

11.97

Weight (kDa)

7.71

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46735
malus_domestica	MD09G1241400.v1.1 MD09G1276400.v1.1 MD11G1232300.v1.1 MD17G1036400.v1.1
prunus_persica	Prupe.2G196100_v2.0.a1
pyrus_communis	pycom01g11150 pycom02g08750 pycom03g19450 pycom07g15430 pycom11g00100 pycom14g16070 pycom15g05630
rosa_chinensis	RchiOBHm_Chr1g0360901
rosa_laevigata	RLG00000027771
rosa_multiflora	Rmu_sc0000677.1_g000033
rosa_roxburghii	Rroxscaffold_4G00295720
rosa_rugosa	Rorug01G0283200
rosa_samantha	Rh1AG294800 Rh1BG259600 Rh1CG277000 Rh1DG289600
rosa_wichuraiana	Rw1G026050 Rw1G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	30, 41
AfiI	CCNNNNNNNGG	1 cut(s)	144
AhdI	GACNNNNNGTC	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	62
AleI	CACNNNNGTG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	30, 41
AspS9I	GGNCC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	4 cut(s)	119, 146, 178, 198
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	157
BsaJI	CCNNGG	4 cut(s)	21, 62, 85, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	4 cut(s)	21, 62, 85, 142
BseGI	GGATG	6 cut(s)	43, 57, 81, 138, 170, 190
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	275
BslFI	GGGAC	4 cut(s)	39, 167, 172, 182
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	4 cut(s)	39, 167, 172, 182
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	276
BssECI	CCNNGG	4 cut(s)	21, 62, 85, 142
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDSI	CCRYGG	2 cut(s)	21, 85
BstF5I	GGATG	6 cut(s)	43, 57, 81, 138, 170, 190
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 311
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	275
BstXI	CCANNNNNNTGG	2 cut(s)	86, 285
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	2 cut(s)	21, 85
BtsCI	GGATG	6 cut(s)	43, 57, 81, 138, 170, 190
BtsIMutI	CAGTG	2 cut(s)	13, 316
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	2 cut(s)	271, 285
CviJI	RGCY	1 cut(s)	275
CviKI_1	RGCY	1 cut(s)	275
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DriI	GACNNNNNGTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	274, 288
FaiI	YATR	5 cut(s)	102, 227, 272, 286, 302
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	4 cut(s)	39, 167, 172, 182
FatI	CATG	2 cut(s)	270, 284
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	6 cut(s)	44, 50, 68, 125, 157, 177
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	274, 288
HinfI	GANTC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	225, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 311
Hsp92II	CATG	2 cut(s)	274, 288
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	49, 76, 187, 192, 261
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	112, 115
MluCI	AATT	3 cut(s)	30, 41, 97
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	65, 116, 137, 170
MslI	CAYNNNNRTG	2 cut(s)	84, 283
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	272, 311
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	274, 288
NlaIV	GGNNCC	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	84
PctI	GAATGC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	84, 283
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	2 cut(s)	57, 108
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	84, 283
Sse9I	AATT	3 cut(s)	30, 41, 97
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	3 cut(s)	30, 41, 97
TscAI	CASTG	2 cut(s)	20, 316
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	36, 54, 259
TspGWI	ACGGA	3 cut(s)	74, 194, 203
TspRI	CASTG	2 cut(s)	20, 316
XapI	RAATTY	2 cut(s)	30, 41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.